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  3. RAFL02-01-C03

RAFL02-01-C03

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00098)

full reading [+] show sequence

Nucleotide sequence: RAFL02-01-C03 - full reading 
GTGAACTTAA CGTCTCTCTC TATTCCTCTG CTTCTCTCTT TCTCCCTGTG 
AAAAAATGGA CTCGGTGGCT CTCTACTGCA CCGCTGGTCT CATTGCCGGC 
GCCGTCTACT GGTTCATATG CGTCCTAGGT CCAGCAGAAC GAAAAGGCAA 
ACGAGCCTCT GATCTCTCCG GCGGCTCAAT CTCCGCAGAA AAAGTCAAAG 
ACAACTATAA CCAATACTGG TCTTTCTTCC GCAAACCAAA AGAGATCGAA 
TCAGCCGAGA AAGTACCTGA CTTCGTCGAC ACGTTCTACA ATCTTGTCAC 
TGATATCTAC GAGTGGGGAT GGGGACAATC TTTCCATTTC TCTCCTCATG 
TCCCTGGAAA ATCCGACAAA GACGCCACAA GAATCCACGA AGAAATGGCC 
GTCGATCTCA TCAAAGTGAA ACCGGGACAA AAGATTCTTG ACGCTGGTTG 
CGGCGTGGGT GGGCCGATGA GAGCCATCGC GGCCCATTCC AAGGCCCAAG 
TCACTGGAAT CACTATCAAC GAGTACCAAG TGCAACGAGC CAAGCTTCAC 
AACAAGAAAG CTGGACTTGA TTCTCTCTGC AACGTCGTTT GTGGTAACTT 
TTTAAAGATG CCGTTCGATG AAAACACGTT TGACGGAGCT TACTCGATCG 
AAGCTACGTG TCACGCTCCT AAGCTCGAAG AAGTATACTC GGAGATCTTC 
AGAGTGATGA AACCAGGATC TTTGTTCGTG TCCTACGAAT GGGTCACCAC 
TGAAAAATAC AGAGACGATG ACGAAGAACA CAAGGACGTG ATTCAAGGGA 
TCGAGAGAGG AGACGCACTT CCTGGACTAA GAAGCTACGC TGATATAGCC 
GTGACGGCGA AGAAAGTTGG GTTTGAGGTA GTGAAGGAGA AAGATTTGGC 
TAAACCACCG TCTAAACCGT GGTGGAACCG GTTAAAGATG GGAAGGATTG 
CTTATTGGAG AAACCATGTT GTGGTTGTGA TTCTTTCTGC TATTGGGGTT 
GCTCCTAAAG GAACTGTTGA TGTTCATAAG ATGTTGTTTA AGACTGCTGA 
TTATTTGACC AGAGGTGGTG AGACTGGAAT CTTCTCTCCG ATGCATATGA 
TTCTCTGTAG AAAACCAGAG AAAGCTTCTG AATGAATGAT TGAGAATCTT 
CTTCCTTGTT CTCGTTTTTC TTCTTCTTTC TTTCTAAGTT CATGTTTTGC 
CCCTTAAGAA TCTCTTTGTC GTCGTATTAA TGTTATCACT TTGTTGTTTA 
TTGTATTTTT TTTTTTCAAT TTGATTTGTT TAAATTGATG ATGGATCACT 
GG

Gene models with high sequence identity

  1. AT1G76090.1 [+] show detail - sterol methyltransferase 3
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily S-adenosyl-L-methionine-dependent methyltrans 3.2e-55
Gene3D no description 1.3e-41
HMMPfam Methyltransferase type 11 3e-20
HMMPfam Sterol methyltransferase C-terminal 4.7e-15
HMMPanther S-ADENOSYL-L-METHIONINE:DELTA24-STEROL-C-METH 2e-206
HMMPanther METHYLTRANSFERASE 2e-206
Coil coiled-coil 0

See the detailed result >

AT1G76090.1

Model type
Protein coding
Short Description
sterol methyltransferase 3
Curator Summary
Encodes S-adenosyl-methionine-sterol-C-methyltransferase, an enzyme in the sterol biosynthetic pathway.
Computational Description
sterol methyltransferase 3 (SMT3); CONTAINS InterPro DOMAIN/s: Sterol methyltransferase C-terminal (InterPro:IPR013705), Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: sterol methyltransferase 2 (TAIR:AT1G20330.1); Has 10191 Blast hits to 10184 proteins in 2043 species: Archae - 312; Bacteria - 6392; Metazoa - 125; Fungi - 424; Plants - 648; Viruses - 0; Other Eukaryotes - 2290 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL02-01-C03 introduced

  • F30208 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found