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RAFL02-01-K01

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00162)

full reading [+] show sequence

Nucleotide sequence: RAFL02-01-K01 - full reading 
GTGTGCTCTC CTCACTTCAC TCGTCCTTGA AACTTGAGCT TCAATTACAA 
AGAATGGCTG CTTCAAGTGC TGTCACCGCA AACTACGTCC TCAAGCCACC 
TCCATTCGCA CTGGATGCTT TGGAGCCGCA TATGAGCAAA CAAACTCTGG 
AGTTTCACTG GGGAAAACAT CACAGAGCTT ACGTGGACAA CCTCAAGAAA 
CAGGTTCTTG GAACCGAGCT TGAAGGCAAG CCCTTAGAGC ACATTATCCA 
CAGCACTTAC AACAATGGTG ATCTCCTCCC TGCTTTCAAC AACGCTGCTC 
AGGCGTGGAA CCACGAGTTC TTCTGGGAGT CAATGAAACC AGGTGGTGGA 
GGAAAACCAT CAGGAGAGCT TCTTGCTTTG CTTGAAAGAG ATTTCACTTC 
TTATGAGAAG TTCTATGAAG AGTTCAATGC TGCTGCAGCC ACTCAGTTTG 
GAGCTGGCTG GGCCTGGCTT GCTTATTCAA ATGAAAAACT CAAAGTAGTG 
AAAACTCCCA ATGCTGTGAA TCCCCTTGTG CTCGGCTCTT TCCCATTGCT 
TACCATTGAT GTCTGGGAGC ATGCTTACTA CCTTGACTTC CAGAACCGAA 
GACCAGATTA CATAAAGACA TTCATGACCA ATCTTGTGTC TTGGGAAGCT 
GTAAGTGCCA GACTTGAGGC CGCCAAGGCT GCTTCTGCTT AAGCAAATTT 
CTGAACAATT TGACTTCAGT GACAGTGAGT TCTGCATCAC CGAAGTCTCT 
TATAAAATAT TGGTCGCTGT AATAAGGACA CAGCTCTCTT GTTGTGTATG 
TGTCACAGAG TTCTTCATTT TGCTTGTGTA ATGAACAATT AAACATGCTC 
TTTTCTGAGT GTGTGTGCGT TTTGTGTGTG TCAAGTTTTT CATCGTCTCC 
TTTATTAAAC TCAAATTGGC ACCTACCATC AGTAATTCAT AGTTTGGCAT 
GGCCCATT

Gene models with high sequence identity

  1. AT4G25100.2 [+] show detail - Fe superoxide dismutase 1
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Manganese/iron superoxide dismutase, C-terminal 1.2e-38
HMMPfam Manganese/iron superoxide dismutase, N-terminal 1.4e-26
superfamily Manganese/iron superoxide dismutase, C-terminal 3.3e-42
superfamily Manganese/iron superoxide dismutase, N-terminal 3e-34
PatternScan Manganese/iron superoxide dismutase, binding site 0
HMMPanther SUPEROXIDE DISMUTASE [FE] 1e-130
HMMPanther Manganese/iron superoxide dismutase 1e-130
HMMPIR Manganese/iron superoxide dismutase 2.3e-101
FPrintScan Manganese/iron superoxide dismutase 2.8e-18
FPrintScan Manganese/iron superoxide dismutase 2.8e-18
FPrintScan Manganese/iron superoxide dismutase 2.8e-18
FPrintScan Manganese/iron superoxide dismutase 2.8e-18
FPrintScan Manganese/iron superoxide dismutase 2.8e-18

See the detailed result >

AT4G25100.2

Model type
Protein coding
Short Description
Fe superoxide dismutase 1
Curator Summary
Fe-superoxide dismutase
Computational Description
Fe superoxide dismutase 1 (FSD1); FUNCTIONS IN: superoxide dismutase activity, copper ion binding; INVOLVED IN: response to oxidative stress, response to cadmium ion, removal of superoxide radicals, response to copper ion, circadian rhythm; LOCATED IN: thylakoid, mitochondrion, plasma membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Manganese/iron superoxide dismutase, N-terminal (InterPro:IPR019831), Manganese/iron superoxide dismutase (InterPro:IPR001189), Manganese/iron superoxide dismutase, C-terminal (InterPro:IPR019832), Manganese/iron superoxide dismutase, binding site (InterPro:IPR019833); BEST Arabidopsis thaliana protein match is: Fe superoxide dismutase 2 (TAIR:AT5G51100.1); Has 11570 Blast hits to 11569 proteins in 3359 species: Archae - 194; Bacteria - 8166; Metazoa - 431; Fungi - 784; Plants - 398; Viruses - 1; Other Eukaryotes - 1596 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL02-01-K01 introduced

  • F24027 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

2 mutant lines found