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Full-length cDNAs
RAFL02-02-F05

RAFL02-02-F05

RIKEN Arabidopsis Full-length cDNAs

CAAGTGGTTC GGAGCTGTTT CTAAGAAAAC AACAGGTAGT TCGGATCGGA 
GCTACGCTTG CAAAACTCAA AACATGGCGA GGGGTTTGAA GAAGCATCTG 
AAGAGGCTTA ATGCGCCTAA GCATTGGATG CTTGACAAAC TTGGTGGTGC 
ATTTGCCCCA AAGCCGTCTT CTGGACCACA TAAGTCAAGG GAGTGCCTTC 
CCCTCGTCCT TATCATCAGG AACAGGTTGG AGTATGCTCT TACCTACCGT 
GAAGTGATTT CAATCTTGAT GCAAAGGCAT ATCCAAGTTG ATGGGAAAGT 
CAGGACGGAC AAGACCTACC CTGCTGGTTT CATGGATGTT GTGTCTATCC 
CCAAGACCAA TGAGAACTTC CGTCTTCTCT ATGATACCAA GGGACGTTTC 
CGTCTCCACT CCATCAAGGA TGAGGAAGCA AAGTTCAAAC TTTGCAAGGT 
TCGATCTATC CAGTTTGGAC AGAAAGGCAT TCCTTACCTG AACACTTACG 
ATGGTCGCAC CATCCGTTAC CCTGACCCGC TCATCAAGCC TAATGACACC 
ATCAAGCTCG ACCTTGAGGC CAACAAGATT GTCGAGTTCA TCAAGTTTGA 
TGTTGGCAAT GTTGTGATGG TTACAGGAGG TAGAAACAGA GGGCGTGTTG 
GTGTGATTAA AAACCGTGAG AAGCATAAGG GAAGCTTTGA GACAATCCAC 
ATCCAAGATT CAACAGGACA TGAGTTTGCA ACAAGGTTGG GTAATGTGTA 
CACCATTGGC AAAGGAACAA AGCCATGGGT GTCTCTTCCC AAGGGCAAAG 
GTATCAAGCT GACTATCATC GAGGAGGCCA GGAAGAGGCT TGCTAGTCAA 
CAGGCTGCTT AATTTTGTGA TTTTCAGTTC TTTGTTATGC TTCTTTAGAC 
GTTTCATATT TCCTAGACTC ACTTCGTTTC TTTTGGTACT CTGCTCAGTT 
TTGAAACTTC TCTTATATTA TTTATTTCAA GAGTTAAAAA CATCT

Gene models with high sequence identity

AT5G58420.1 [+] show detail - Ribosomal protein S4 (RPS4A) family protein
E-value: 0; Score: 99.90

InterPro Scan Digest

Program	Description	E-value
ProfileScan	RNA-binding S4	8.556
HMMPfam	Ribosomal protein S4e, central	5.3e-31
HMMPfam	Ribosomal protein S4e, N-terminal	9.2e-20
HMMPfam	KOW	0.00000042
HMMPfam	RNA-binding S4	0.0000062
HMMSmart	KOW	0.00077
HMMPIR	Ribosomal protein S4e	1.9e-128
PatternScan	Ribosomal protein S4e, N-terminal, conserved site	0
BlastProDom	Ribosomal protein S4e, central	2e-47
HMMPanther	Ribosomal protein S4e	3.8e-195

See the detailed result >

AT5G58420.1

Model type: Protein coding
Short Description: Ribosomal protein S4 (RPS4A) family protein
Computational Description: Ribosomal protein S4 (RPS4A) family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, nucleolus, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S4e, central (InterPro:IPR013845), Ribosomal protein S4e, N-terminal, conserved site (InterPro:IPR018199), KOW (InterPro:IPR005824), RNA-binding S4 (InterPro:IPR002942), Ribosomal protein S4e, N-terminal (InterPro:IPR013843), Ribosomal protein S4e (InterPro:IPR000876); BEST Arabidopsis thaliana protein match is: Ribosomal protein S4 (RPS4A) family protein (TAIR:AT5G07090.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR

Mutant lines with RAFL02-02-F05 introduced

F14951 - Specific phenotypes were NOT observed.
F23903 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found