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  3. RAFL02-03-L10

RAFL02-03-L10

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00256)

full reading [+] show sequence

Nucleotide sequence: RAFL02-03-L10 - full reading 
ACTAGGGTTT CCGTACTGAA TCAACTTCAT CAGTTCGTTT CGTTGTCAAA 
AGCAAAGCAG AGCAAGTTTT ATTTTCCCTC CAAAATTCTA AGTTGATCTT 
CACTTTTTGA TGGCGTCGCG GTTTCAGGAA GCTTCACTGG TTACTTCACC 
GTCGTATCCT AACGCCGTCG CTTGGTCATC GGAAAATCTC ATCGCCGTCG 
CTGCTGGTCA TCTAGTCATC ATCATTAATC CGGCTTTGCC TACTGGCCCT 
CGTGGATTGA TCACAATCTC TGACGCCGAG CTTTATCAGA TTGGTCGTGT 
TCGCTCTCAA GATTTGCTAA CTGGTGGACT CTTGCCTTCG AGTTTGAAGC 
GGGAAAGAAG TCCATGTGTT CGATCTCTCT CATGGTCTGA GATAGGAATG 
TCTCCAAACC ACGGGTGCTT ACTGGCTGTT TGCACAGCGG AAGGAAGGGT 
TAAGCTATAC CGACCTCCAT ATTCTGATTT CTGTGCTGAG TGGATTGAGA 
TTGTTGATAT ATCTAAAATG CTTTATGAGA ATCTATCAAG CATGAACTTT 
GGAGAGTCCA AAAATCCTTC TACTTCATTA TCTAAGGATC AAGTGGTAGA 
ACATGACCAT GAGGAGGATG AAAGGATTTC AAGTCTGAAG GCACGCAAGC 
GAAGAAAAAC AAGTGCAAAT AACATCAACT TGCATGAAAA GAATTATACA 
GATCGAGCAT CATGTTCCAA GCAAGACAGT AAAGCAGAGC ATAATGTACT 
TGAGATTGAA GTATATAAAC AGGCAAGCAA TGGCCAAGAT CGTCGTTCCT 
TGCCTAAAGC TCTAAAAAAA TGCAGTCAAG AGATAAGTCC GCAAACGTAT 
GTGTCTCGTG AGGCATTATT ATCCTCCCAT TCCGTTGCCT GGTCATCTCT 
TCTAAGATTC TCATCAGAAA GTTCTTGTGG GAATATGTTA AGATTCTCTC 
TTTTGGCAAT TGGTTCAAAG TCCGGGAGCG TTTCCATATG GAAAGTTCAT 
GCACCTGAAT GCTATCACAT TGAACGCAGC AATGTATCTC CCATGGTGGA 
ACTTACTGCT ATAGTTCAGA CCCATAGCTC ATGGGTTTCA ACAATGAGTT 
GGGGAATTTT TGGCTGTGAT TCTTCGAATC CGCAAGTGGT GTTGGTTACT 
GGGAGTTGTG ATGGTAGTGT GAAAATTTGG ATGAGCAACA AAGAAGACTT 
GCAAAATTCT GTGGAGGTCT ATAAATCTTC ATTCTTTCTA CTAAAAGAGG 
TTGTAGCAGT GAATCCTGTT CAGGTTTCAA CGCTTTCTTT TGTTGTAAGC 
AACCATTATA ATGCAATGCA CTTGGCAATC GGTAAAGGAT CTGGTTCTTT 
CGAAGTATGG AAGTGTGAAA TATCTACAAG AAAGTTTGAA CAAATTGTTT 
CAACTAATGC TCATAACCAA GTGGTTACAG GTCTAGCTTG GTCATATGAT 
GGCCGTTGTT TGTACAGTTG CAGTCAGGAT AATTATGTCC GGAGCTGGAT 
TTTATGTGAG AATGCCATCT CTGAAGTGCC AATTCCTGCA AACACTCCTG 
GTCTCAGTAG CACGACTGAT CTTCCTGATG ATTTTCTATC ATGCCTTGGT 
GTGGCATTGT CACCTGGAAA CCTTGCTGTT GCTTTGGTCC GCAACTTTAA 
CGTTGAACTC TTGAATCCAA TGTACCAAGC CAGGTCGCAG AAGGCTGCTG 
TAGAATTCCT CTGGAATGGT GCACAACAAT CTGGTGAGTC AGAAGATTCT 
ACAGAGACGG TAACCGAAGC TATTCTGGGT TTCTCAAAGA ATGAATTCGC 
AAATTGGGAA TCCAATATTC TCTGGTCGTT AAAAGAATTC AACTATTTGA 
ATAAGCCTCT AGTTCTTTGG GATATGGTAG CTGCAATGCT GGCGTTCAAA 
CAATCAATGC CAGAGTTTGT TGAATTAGTA TTAACTAAAT GGCTCTCTGT 
GTCATACCTT GGATTTCATG ATGATATCTC CATGGAAGAT CTCGTGCCAA 
AGATCACCAA ACGCTTCTCT GATGTTCCTT CCAGGCTGTT ACACATTCTC 
AACGTAATCT CTAGACGTGT AATGTTATCG GAACTCAAAA CAGAAGAAAT 
CAACAGAAAA CTGCAAGGTC AGAGAACGAA CGATGAAGGA GAAATTGATC 
TGTGGCTCAA ACTGCTTCAA GAAAGTGAAC GAGAACTCCG AGAAAGACTG 
GTTGGTCTCA GTTTCTCGGC TTATTTACTC GCTGAGTCAT CTCAGGGTAC 
TATTTCGCCT CCCTCTTGGA ATTGGCGTCC AGCTGGATTG GCTCTGTTGC 
AACAATGGGT TGAGATAAAT CGTGATATTG TCCATAGTCA GCTGGAAACA 
CTTTCCTTAG AAGTAAAATC TAGTCGAACG AGATCAAGTA ATAGCACAGA 
AACTGCATTA GAGGAAGAGA AATGTCCTTA TTGTGCAGCG CCAGTAAATT 
TCCACTCAGC AGAGGAAGCC TTTTGCGAAT CTTCGCACC

Gene models with high sequence identity

  1. AT3G49400.1 [+] show detail - Transducin/WD40 repeat-like superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily WD40 repeat-like-containing domain 1.1e-20
HMMPanther SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPT 0.00055
Gene3D WD40/YVTN repeat-like-containing domain 2.1e-16
ProfileScan WD40 repeat 2 10.742
ProfileScan WD40-repeat-containing domain 9.678
HMMPfam WD40 repeat, subgroup 0.0012
HMMPfam WD40 repeat, subgroup 4.8e-06
HMMSmart WD40 repeat 280
HMMSmart WD40 repeat 41
HMMSmart WD40 repeat 410
HMMSmart WD40 repeat 0.019
HMMSmart WD40 repeat 0.0011

See the detailed result >

AT3G49400.1

Model type
Protein coding
Short Description
Transducin/WD40 repeat-like superfamily protein
Computational Description
Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo, sperm cell, flower, cultured cell; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat 2 (InterPro:IPR019782), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); Has 959 Blast hits to 868 proteins in 197 species: Archae - 0; Bacteria - 241; Metazoa - 222; Fungi - 181; Plants - 154; Viruses - 0; Other Eukaryotes - 161 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL02-03-L10 introduced

  • F26232 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

1 mutant line founds