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  3. RAFL02-05-B07

RAFL02-05-B07

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00126)

full reading [+] show sequence

Nucleotide sequence: RAFL02-05-B07 - full reading 
CTTCAAAAAA CTCTCCACTC AACTCTCTCT GGTCAGCTGT CTCTTCCCCA 
TTCTCTAGGG TTTTCAAGCT CAACCTCAAG CTCCACTACG ATCTCTTCTT 
CTTCTCTAAT CTCAGTTGAA AGATGCAAGG TGTGATTCGA TCCTTCGTCT 
CCGGTGGAAA TGTTGTGAAA GGCTCTGTGC TGCAACATCT CCGTGTGATT 
AACCCGGCGA TTCAGCCTTC TGTGTTTTGT TCACGCTCTG AATCAACTCA 
ACCTGCACGT ATGGAGGAAT CTGGATTCGA GAGCACAACT ATTTCCGATG 
TCATGAAATC CAAAGGCAAA AGTGCTGATG GATCTTGGCT TTGGTGTACT 
ACTGATGACA CTGTTTATGA TGCTGTTAAA TCCATGACAC AACACAATGT 
TGGTGCCTTG GTGGTTGTGA AACCTGGTGA GCAACAAGCT CTTGCTGGTA 
TCATTACAGA GAGAGATTAT CTACGGAAGA TCATTGTGCA AGGGAGATCA 
TCCAAATCAA CAAAAGTTGG AGACATTATG ACTGAAGAGA ATAAGCTTAT 
CACTGTGACA CCGGAGACCA AGGTCTTGCG TGCTATGCAA CTGATGACAG 
ATAACCGAAT CAGGCATATT CCGGTAATCA AAGACAAGGG CATGATTGGA 
ATGGTGTCCA TAGGAGATGT TGTCCGTGCA GTGGTTCATG AGCATAGAGA 
GGAGCTTCAA CGCCTAAATG CGTATATTCA GGGAGGTTAC TAGATCTTGA 
ATAATGGAAA GAAAAGAGTT CCCTGTTGTG TCGTCTGGTC TTGTGCTGCT 
GAATCTGAAA AGCTTCCAGA TCAGTGTAAA TATGCAGTCC TCGTTGTTAT 
TGTTGTTGTT GTTGTGTTTG ATGTTTTGTG TTGTTTCGTT GTTTAACTTG 
TCAAAACTAA GGCCTTGTGC TGCTTCTCTT CTTGCGCTTA CTTAGCAAGA 
GAATAAAACC AAAAACTCTG ATCTC

Gene models with high sequence identity

  1. AT5G10860.1 [+] show detail - Cystathionine beta-synthase (CBS) family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Cystathionine beta-synthase, core 0.00000024
HMMPfam Cystathionine beta-synthase, core 0.0000000000014
HMMSmart Cystathionine beta-synthase, core 0.00024
HMMSmart Cystathionine beta-synthase, core 0.0000000044
superfamily CBS-domain 0.0000000000000048
superfamily CBS-domain 0.0000000017
ProfileScan Cystathionine beta-synthase, core 10.844
ProfileScan Cystathionine beta-synthase, core 13.666
HMMPanther INOSINE-5-MONOPHOSPHATE DEHYDROGENASE RELATED 1.5e-38
HMMPanther INOSINE-5-MONOPHOSPHATE DEHYDROGENASE RELATED 1.5e-38

See the detailed result >

AT5G10860.1

Model type
Protein coding
Short Description
Cystathionine beta-synthase (CBS) family protein
Computational Description
Cystathionine beta-synthase (CBS) family protein; FUNCTIONS IN: cobalt ion binding; INVOLVED IN: response to salt stress; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: Cystathionine beta-synthase (CBS) family protein (TAIR:AT1G47271.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL02-05-B07 introduced

  • F11808 - rosette leaf::epinastic / rosette leaf::present in greater numbers in organism / rosette leaf::abnormal / stem::dark green / cauline leaf::epinastic / cauline leaf::dark green
  • F12829 - Specific phenotypes were NOT observed.
  • F20516 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found