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RAFL02-05-J08

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02233)

full reading [+] show sequence

Nucleotide sequence: RAFL02-05-J08 - full reading 
GTAGATCTAT TTCCGCATCT GCTTAAACAC CTACATCGTC GTAGATCGCA 
AACCATGGCC GTCGCTGTAG CTAAGCTTCT GATCTCCGCC ATGGCGGTTT 
TCATGCTTGT TTCTGCTTCG TTCGCGACCT CGGAAGTGCC GTTCATGGTG 
GTTCACAAGA AAGCCACTCT CAACAGGCTC AAATCTGGCG CCGAACGCGT 
CTCCGTTTCC TACGACATCT ATAACCAAGG ATCCTCGTCG GCGTATGATG 
TGACTCTGAC AGATAATAGC TGGGATAAAA AGACTTTTGA AGTTGTTAAT 
GGAAACACTT CAAAATCATG GGAAAGACTT GATGCAGGAG GTATTCTGTC 
TCATTCTATC GAATTGGAGG CCAAGGTTAA AGGAGTCTTC TACGGTGCTC 
CTGCTGTCGT TACTTTCCGC ATCCCCACTA AGCCAGCTCT TCAGGAAGCA 
TACTCAACTC CACTACTACC TCTAGATATC CTCGCAGACA AACCTCCAAC 
GAAACCTTTG GACGTGGCCA AGAGGTTGCT GGCGAAATAT GGATCACTCG 
TCTCCGTGAT CTCCATGGTG GTTTGTTTCA TATACTTGGT GGCAACACCT 
AAGTCCAACG TATCAAAGGC AAGCAGCAAG AAGAAGCGTT AAGTTAGTGA 
AATGAAAGGT GAGAAAGGTT GGTACGGTGC TGTTTTCTGT TTAACAGTTA 
AACACAGTTT CAAAACTTGT AAGAATTAGA GAACACACTT TAATTTTGGT 
GTTGCAGAGG ACATACTTCA AGTTCAAAGA GTTATTTTGG TTTTACTTAA 
AAAAAAAAAA AAAAAAAAAA AAAG

Gene models with high sequence identity

  1. AT5G14030.1 [+] show detail - translocon-associated protein beta (TRAPB) family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther Translocon-associated beta 5.3e-95
HMMPfam Translocon-associated beta 3.6e-58

See the detailed result >

AT5G14030.1

Model type
Protein coding
Short Description
translocon-associated protein beta (TRAPB) family protein
Computational Description
translocon-associated protein beta (TRAPB) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translocon-associated beta (InterPro:IPR008856); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL02-05-J08 introduced

  • F02821 - Specific phenotypes were NOT observed.
  • F20128 - Specific phenotypes were NOT observed.
  • F23735 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

18 mutant lines found