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RAFL02-05-J09

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00135)

full reading [+] show sequence

Nucleotide sequence: RAFL02-05-J09 - full reading 
AGAAATTTTC TTCCGCCGTA AAAGCAAAAA AAGATGCAGA TCTTCGTGAA 
AACCCTAACG GGGAAGACGA TCACTCTCGA GGTCGAGTCC TCTGACACCA 
TCGACAATGT CAAGGCCAAG ATCCAAGACA AGGAAGGAAT CCCACCGGAC 
CAGCAGCGAT TGATTTTCGC CGGAAAGCAG CTCGAAGACG GACGTACCTT 
AGCCGATTAC AACATCCAGA AGGAATCAAC GCTTCACCTT GTCCTTCGTC 
TCCGTGGAGG TGCTAAGAAG AGGAAGAAGA AGACCTACAC CAAGCCTAAG 
AAGATCAAGC ACAAGCACAA GAAGGTCAAG CTCGCTGTTC TTCAGTTCTA 
CAAGGTTGAT GGTTCAGGTA AGGTTCAGCG TTTGAGGAAG GAGTGCCCTA 
ACGCAACCTG TGGTGCTGGG ACTTTCATGG CGAGTCATTT CGATCGTCAC 
TACTGTGGTA AGTGTGGTCT CACCTACGTT TACCAGAAAG AAGGAGCTCA 
GGAATGATTT TCATCTCGAT CTCTATCATT TTGAATTGAA TACTGCTTTT 
TTTTTGGAAT TTGGAAGTTG TTTTTGGATG TTGTGGATCT TATGTTGAAC 
TTGTTTGAAT TTCATATCTA GGTTTTTCTT ATGGATATTT TTATGCTCTT 
TATTTGAATT ACTTTCAAAT CTTATTGC

Gene models with high sequence identity

  1. AT2G47110.1 [+] show detail - ubiquitin 6
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily Ubiquitin-like 5.7e-35
Gene3D no description 1.1e-30
HMMPfam Ubiquitin 2.1e-34
HMMPfam Ribosomal protein S27a 7.8e-27
Coil coiled-coil 0
HMMSmart Ubiquitin 3e-35
FPrintScan Ubiquitin subgroup 6.2e-39
FPrintScan Ubiquitin subgroup 6.2e-39
FPrintScan Ubiquitin subgroup 6.2e-39
HMMPanther UBIQUITIN 7e-80
HMMPanther UBIQUITIN 7e-80
PatternScan Ubiquitin conserved site 0
ProfileScan Ubiquitin supergroup 30.452

See the detailed result >

AT2G47110.1

Model type
Protein coding
Short Description
ubiquitin 6
Curator Summary
polyubiquitin gene
Computational Description
ubiquitin 6 (UBQ6); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: protein ubiquitination involved in ubiquitin-dependent protein catabolic process, ubiquitin-dependent protein catabolic process; LOCATED IN: cytosolic small ribosomal subunit, intracellular; EXPRESSED IN: whole plant, male gametophyte, guard cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ribosomal protein S27a (InterPro:IPR002906), Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: ubiquitin 5 (TAIR:AT3G62250.1); Has 12701 Blast hits to 7389 proteins in 781 species: Archae - 108; Bacteria - 19; Metazoa - 5539; Fungi - 1408; Plants - 3106; Viruses - 188; Other Eukaryotes - 2333 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL02-05-J09 introduced

  • F09249 - Specific phenotypes were NOT observed.
  • F10432 - Specific phenotypes were NOT observed.
  • F12146 - Specific phenotypes were NOT observed.
  • F22439 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

6 mutant lines found