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RAFL02-06-B01

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02234)

full reading [+] show sequence

Nucleotide sequence: RAFL02-06-B01 - full reading 
TCTCTCTCTC TCTCTGCTCC ATTTCTCTCA CTTTCTTCAC ATCTCTGAAG 
CTCTTCGTCA CGCATCTACA ATGGCATCGA TGATGCAACC GCAGATCATA 
CTGCTGAAGG AAGGGACGGA CACATCTCAG GGCAAAGCGC AACTAGTAAG 
CAACATCAAC GCTTGCACTG CTGTTGGAGA TGTAGTTCGA ACCACGCTCG 
GGCCACGAGG GATGGACAAA CTCATTCACG ACGATAAAGG ATCCGTCACC 
ATTTCTAACG ATGGTGCTAC CATCATGAAG CTCCTCGACA TTGTTCATCC 
TGCTGCTAAG ATCCTCGTCG ATATCGCCAA ATCCCAAGAC TCCGAGGTGG 
GTGATGGGAC AACTACAGTG GTTCTTCTTG CAGCAGAGTT TTTGAAGGAA 
GCGAAGCCAT TTATTGAGGA TGGTGTTCAC GCTCAGAATC TAATTAGGAG 
TTACCGCACT GCAAGCACTT TGGCAATTGC CAAGGTTAAA GAACTCGCTG 
TTAGCATTGA GGGGAAGAGT GTAGAGGAAA AGAAAGGTTT ATTGGCTAAA 
TGTGCTGCTA CGACTCTCTC ATCTAAGCTT ATCGGTGGAG AAAAGGAGTT 
TTTTGCTACA ATGGTTGTTG ATGCTGTTAT GGCCATTGGG AATGACGACA 
GGCTAAATCT GATTGGGATC AAGAAGGTTC CTGGTGGCAA TATGCGAGAC 
TCTTTCCTCG TTGATGGTGT AGCTTTCAAA AAAACATTCT CGTATGCTGG 
TTTTGAGCAA CAGCCAAAGA AATTTCTTAA CCCCAAAATT CTCTTGCTTA 
ACATCGAATT GGAGTTGAAA TCTGAGAAGG AAAACGCTGA AATTAGGCTG 
TCAGATCCAT CACAGTACCA GTCAATAGTT GATGCAGAAT GGAATATCAT 
TTATGACAAA CTAGACAAAT GTGTTGAGAG TGGAGCAAAA GTTGTTCTTT 
CTCGATTGGC TATTGGTGAT CTAGCTACTC AGTATTTTGC CGATCGTGAT 
ATTTTCTGTG CTGGTCGTGT TGCTGAGGAA GATCTTAACC GTGTGGCTGC 
TGCAGCTGGA GGAACAGTTC AGACAAGTGT TAACAACATA ATAGATGAGG 
TTCTTGGAAC TTGTGAGATT TTTGAGGAAA AACAAGTTGG TGGGGAGAGA 
TTTAATATAT TCAGTGGTTG CCCTTCAGGA CGAACAGCAA CTATTGTTCT 
CCGTGGTGGA GCTGATCAGT TCATCGAAGA AGCTGAGCGG AGTTTACATG 
ATGCGATTAT GATTGTGAGA AGAGCTGTGA AGAACTCAAC TGTTGTTCCT 
GGAGGTGGAG CTATAGATAT GGAGATAAGC AAGTACCTGA GGCAGCATTC 
AAGAACAATT GCTGGGAAGT CACAGCTTTT CATCAACTCT TATGCGAAGG 
CTCTAGAGGT TATTCCACGA CAGTTATGTG ATAATGCTGG ATTTGATGCA 
ACTGACGTCT TGAATAAACT TAGACAAAAA CACGCCATGC AAAGCGGTGA 
AGGAGCTTCG TATGGAGTGG ACATTAACAC TGGTGGCATA GCAGATTCTT 
TTGCTAACTT CGTTTGGGAA CCAGCAGTTG TGAAGATCAA CGCAATAAAT 
GCTGCGACTG AAGCGGCTTG CCTCATTCTT AGTGTCGACG AAACCGTGAA 
GAACCCTAAA TCTGAGAGCG CACAGGGAGA CGCCGCAGGT GCAATGGGGA 
GAGGACGCGG TGGAGGTCGT GGCCGTGGAA TGCGAAGGCG ATAAGCTCCG 
TCTCTAATGC CAAACTTGTG GGATTCTTCT TCTTCTTCTC TAATTTCGAT 
TTTGTTGAAT TTTTGTTTTG AAGTTAAAAA ACCTATTATT GGGTTTGTGT 
TTGTTCAATT AGAATACTGG TTGGGTATGT ATGTCTATAC AATCTGTGAA 
ACATAAGTTT TAGTGTTGTT TTGGTTAAGG AGTTAAG

Gene models with high sequence identity

  1. AT3G11830.1 [+] show detail - TCP-1/cpn60 chaperonin family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMTigr T-complex protein 1, eta subunit 0
PatternScan Chaperonin TCP-1, conserved site 0
PatternScan Chaperonin TCP-1, conserved site 0
PatternScan Chaperonin TCP-1, conserved site 0
superfamily Chaperonin Cpn60/TCP-1 2.7e-90
superfamily GroEL apical domain-like 3.1e-51
superfamily GroEL-intermediate domain like 3e-28
Gene3D no description 9.4e-78
FPrintScan Chaperone, tailless complex polypeptide 1 1.2e-30
FPrintScan Chaperone, tailless complex polypeptide 1 1.2e-30
FPrintScan Chaperone, tailless complex polypeptide 1 1.2e-30
FPrintScan Chaperone, tailless complex polypeptide 1 1.2e-30
FPrintScan Chaperone, tailless complex polypeptide 1 1.2e-30
HMMPfam Chaperonin Cpn60/TCP-1 8.1e-149
HMMPanther T-complex protein 1, eta subunit 0
HMMPanther Chaperonin Cpn60/TCP-1 0

See the detailed result >

AT3G11830.1

Model type
Protein coding
Short Description
TCP-1/cpn60 chaperonin family protein
Computational Description
TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: unfolded protein binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), T-complex protein 1, eta subunit (InterPro:IPR012720), Chaperonin TCP-1, conserved site (InterPro:IPR002194); BEST Arabidopsis thaliana protein match is: T-complex protein 1 alpha subunit (TAIR:AT3G20050.1); Has 19825 Blast hits to 19758 proteins in 3880 species: Archae - 808; Bacteria - 8913; Metazoa - 2158; Fungi - 1512; Plants - 862; Viruses - 0; Other Eukaryotes - 5572 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL02-06-B01 introduced

  • F14919 - rosette leaf::epinastic / cauline leaf::epinastic / cauline leaf::dark green / sporophyte vegetative stage::decreased speed / stem::abnormal
  • F19837 - seed::increased size

Mutant lines with disrupted or induced

2 mutant lines found