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RAFL02-06-H10

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02238)

full reading [+] show sequence

Nucleotide sequence: RAFL02-06-H10 - full reading 
AAATTGACGA CAGGCGTTAG TGGCGATTGG CGATGGCAGC TCCTGCGGTG 
GAGGCAACCG TCGCAAGTGC TCTCCGCTCT GTGATTCTTA GAGCTCGTAA 
GGCGGCGGAG CAAGTAGGAA GAGATCCCGA GCGGGTCAGG GTCCTTCCAG 
TCTCCAAGAC TAAACCCGTC TCACTTATCC GCCAAATCTA CGACGCAGGT 
CACCGTTGCT TCGGCGAGAA TTACGTTCAA GAAATCATCG ATAAAGCTCC 
ACAGCTTCCG GAAGATATAG AGTGGCATTT CGTGGGGCAT TTACAGAGCA 
ACAAAGCCAA AACGCTATTG ACTGGAGTCC CAAATTTGGC AATGGTTCAT 
GGTGTGGATG GAGAAAAGGT AGCAAATCAT CTAGATCGAG CTGTTTCAAA 
TCTTGGGAGA CATCCACTAA AGGTTTTGGT CCAAGTGAAC ACAAGCGGAG 
AAGTTTCTAA ATCTGGAATC GAACCTTCTA GCGTTGTAGA GCTAGCAAGA 
CATGTGAAAC ATCACTGTCC AAATCTGGTA TTCTCCGGAT TAATGACTAT 
TGGGATGCCT GATTATACGT CTACCCCAGA GAACTTCAGG ACACTTTCAA 
ACTGTAGAGC TGATGTATGC AAGGCACTTG GAATGGCTGA GGATCAATTT 
GAACTGTCCA TGGGCATGTC TGGTGACTTC GAGCTAGCGA TTGAGATGGG 
AAGCACCAAT GTGAGGGTTG GTTCCACCAT TTTCGGACCA AGAGAGTACC 
CCAAGAAAAC AACTTAGCTA CTATGCTCAA ACACTTGTTG TAAAATTCAT 
GTATAATGTT ATTTTGTCGA TTATTTTAAA CAATTTTATT CTTCATTGAT 
AAACTTAGGT GTATTCACAA AGTTACTTTA TAGAAAATTA GAAATCAATA 
CATTGTTAAA AAAAAAAAAA AG

Gene models with high sequence identity

  1. AT4G26860.1 [+] show detail - Predicted pyridoxal phosphate-dependent enzyme, YBL036C type
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther Predicted pyridoxal phosphate-dependent enzyme, YBL036C type 2.1e-95
HMMPIR Predicted pyridoxal phosphate-dependent enzyme, YBL036C type 3e-98
Gene3D no description 2.9e-73
superfamily PLP-binding barrel 5.8e-75
HMMTigr Predicted pyridoxal phosphate-dependent enzyme, YBL036C type 1.2e-60
PatternScan Predicted pyridoxal phosphate-dependent enzyme, YBL036C type 0
HMMPfam Alanine racemase, N-terminal 1.5e-43

See the detailed result >

AT4G26860.1

Model type
Protein coding
Short Description
Predicted pyridoxal phosphate-dependent enzyme, YBL036C type
Computational Description
Predicted pyridoxal phosphate-dependent enzyme, YBL036C type; CONTAINS InterPro DOMAIN/s: Predicted pyridoxal phosphate-dependent enzyme, YBL036C type (InterPro:IPR011078), Alanine racemase, N-terminal (InterPro:IPR001608); BEST Arabidopsis thaliana protein match is: Predicted pyridoxal phosphate-dependent enzyme, YBL036C type (TAIR:AT1G11930.2); Has 7173 Blast hits to 7173 proteins in 2384 species: Archae - 21; Bacteria - 4279; Metazoa - 130; Fungi - 133; Plants - 56; Viruses - 0; Other Eukaryotes - 2554 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL02-06-H10 introduced

  • F01801 - Specific phenotypes were NOT observed.
  • F22847 - Specific phenotypes were NOT observed.
  • F26751 - rosette leaf::epinastic / rosette leaf::abnormal / rosette leaf::decreased width / whole plant::decreased height / stem::present in fewer numbers in organism

Mutant lines with disrupted or induced

3 mutant lines found