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  3. RAFL02-07-B18

RAFL02-07-B18

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02242)

full reading [+] show sequence

Nucleotide sequence: RAFL02-07-B18 - full reading 
TGCCAACACT CAAACTCAAC TGCTCTCCCA TAACCGAAAC CGAGAGAAAA 
TATAGAAAAA GATGATTGAG ACGGTTAAAC ACCTGATCGG CTCCGGTGGT 
CCCAGCGGAT TCGGGTCAAG ATCCACCGCC GATCATGTCA CTTGTAATTC 
TGATCTCCGT TCTCTAACTG CCATCATCAC TGGCGCGACG TCGGGGATAG 
GAGCTGAGAC GGCGCGTGTT CTTGCTAAGC GTGGCGCAAG ACTTGTGCTT 
CCGGCTAGAA GCGTCAAAAC CGCCGAGGAA ACAAAGGCTC GTATACTGTC 
GGAGTTTCCT GATGCGGAGA TCATCGTTAT GCATCTTGAT CTCAGCTCAC 
TTACCTCTGT TCGTCGATTC GTGGACGATT TCGAATCTCT CAATCTCCCA 
CTCAACATCC TCATAAACAA TGCTGGGAAA TATGCGCATA AGCATGCCCT 
CTCTGAGGAC GGTGTGGAGA TGACCTTCGC TACTAATTAT CTCGGCCATT 
TTCTGCTGAC TAAACTGCTG TTAAAGAAGA TGATTGAAAC GGCGGCACAA 
ACCGGCGTGC AAGGCCGTAT CGTCAACGTC ACGTCCGTCG TCCATAGCTG 
GTTTTCCGGT GATATGTTGC AATATCTCGC CGATATCTCA CGAAACAATA 
GAAATTACGA CGCGACTCGA GCCTACGCTC TCTCCAAGCT CGCCAACGTG 
CTCCACACTG TTGAGCTATC ACGGCTTCTC CATAAAATGG ATGCGAATGT 
GACGGCCAAT TGTGTTCATC CTGGTATCGT GAAAACCCGT CTCACAAGAG 
ATCGAGAAGG CGTCGTCACT GATTTAGTGT TTTTCTTGAC ATCCAAGCTA 
TTGAAGTCTG TTCCTCAGGC AGCAGCTACG ACATGTTACG TGGCAACAAG 
TCCAAGATTG AGGAACGTGT GTGGCAAGTA CTTCTCCGAC TGCAACGAAG 
CTAGGTCATC TAAATCCGGG TCATGCAATC TCAAAGCTCA GAGACTCTGG 
ACTGCTTCTG ACTTGTTGGT TTCTCCACCT AATTCCACTA CCAATCTTTC 
TCATACCTCC TTTTAACCAA CAAACCATCC TAGCTATTTT CTACGTGTAA 
ATCTTAAGCC CTATATATAG TAATATAATT AGCTTTATAA TATATATAGT 
TATAGAAATA TATACTATAG ATGAAATGGG ATGTGTGTGT GTAGTTGTGT 
TACGTGTGCA TATAGCAAGC CTCCCTATAT TTAATATGTG GTTATGGTTT 
GACATTATTG CTAATATATA TATATATATA TATTACTTAG CTTGTAGGGT 
TTTGTAATCC TAGCTAGCTA GGTCCTTGTT ATGTAATATA TACATATATC 
AATCAAAAAC ATCACAGAAT TTCAT

Gene models with high sequence identity

  1. AT1G64590.1 [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily NAD(P)-binding domain 6e-53
HMMPanther RETINOL DEHYDROGENASE 2.1e-121
HMMPanther Short-chain dehydrogenase/reductase SDR 2.1e-121
Gene3D NAD(P)-binding domain 1.9e-51
HMMPfam Short-chain dehydrogenase/reductase SDR 5.2e-22
FPrintScan Glucose/ribitol dehydrogenase 4.4e-16
FPrintScan Glucose/ribitol dehydrogenase 4.4e-16
FPrintScan Glucose/ribitol dehydrogenase 4.4e-16
FPrintScan Glucose/ribitol dehydrogenase 4.4e-16

See the detailed result >

AT1G64590.1

Model type
Protein coding
Short Description
NAD(P)-binding Rossmann-fold superfamily protein
Computational Description
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT4G24050.1); Has 62352 Blast hits to 62301 proteins in 3130 species: Archae - 564; Bacteria - 41137; Metazoa - 4183; Fungi - 3748; Plants - 2129; Viruses - 0; Other Eukaryotes - 10591 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL02-07-B18 introduced

  • F29337 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found