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RAFL02-07-J21

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02246)

full reading [+] show sequence

Nucleotide sequence: RAFL02-07-J21 - full reading 
ACAAATCTCA CATCCTCACT CCTCAGCTCC TCAAATCAGA ATGAATCAAT 
CCGCGCAAAA TTACTTTTCC GTGCAAAAAC CTTCAGAGAC TTCATCAGGG 
CCGTACACAA GTCCGCCACC AATTGGTTAT CCGACTAGAG ATGCGGTGGT 
GGGTGATCCT CCGGCAGCAG CAGTGGAGAC AAACTCCAAG GGCGTCAACC 
CCGAAGCCAT AATGAGTTGT TTTAGTACTT GTATGGAGTG TATCTTCTGC 
TGCGGCGTAT GCTCCAGCCT CTGTACATCA GAGTAAATCA GCATGATGAG 
ACAGAAGTCG TTGCCCAAAC CTGAAAAACA ACACGTGATA GAAAATCTAT 
ATATATATAT ATATATATAT ATGTTATAGT AGTCGTTTCT ATGGATTTCC 
ACGCATTTTA AAGTTTATTT GTTTCACTGT TTAAAATGAA TCATTTGCTT 
CGTGTATTTT GTTTCTATAT AAATAAAAGA AATTAAAAAC C

Gene models with high sequence identity

  1. AT3G22231.1 [+] show detail - pathogen and circadian controlled 1
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

See the detailed result >

AT3G22231.1

Model type
Protein coding
Short Description
pathogen and circadian controlled 1
Curator Summary
Encodes a member of a novel 6 member Arabidopsis gene family. Expression of PCC1 is regulated by the circadian clock and is upregulated in response to both virulent and avirulent strains of Pseudomonas syringae pv. tomato.
Computational Description
PATHOGEN AND CIRCADIAN CONTROLLED 1 (PCC1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to fungus, response to bacterium; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G22235.2); Has 49 Blast hits to 49 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL02-07-J21 introduced

  • F01741 - seed::increased size
  • F02039 - Specific phenotypes were NOT observed.
  • F07141 - Specific phenotypes were NOT observed.
  • F11701 - Specific phenotypes were NOT observed.
  • F12140 - Specific phenotypes were NOT observed.
  • F16028 - Specific phenotypes were NOT observed.
  • F18513 - Specific phenotypes were NOT observed.
  • F19122 - Specific phenotypes were NOT observed.
  • F19544 - Specific phenotypes were NOT observed.
  • F27629 - Specific phenotypes were NOT observed.
  • F28948 - Specific phenotypes were NOT observed.
  • F29413 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

13 mutant lines found