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  3. RAFL02-07-L07

RAFL02-07-L07

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02247)

full reading [+] show sequence

Nucleotide sequence: RAFL02-07-L07 - full reading 
CTCTTCTCTT TTGTATACAA AAACCCTAGT CGACGGCGCT GTTACACCGT 
CGTCCAGATT TTTCAAACGC CGACGAAGCT GATTTAGTGA ATATGGAATC 
TAATGGATCA GTTTCATCGA TGGTTAACTT GGAGAAGTTT CTCTGTGAGC 
GATTGGTGGA CCAGTCACAA CCAATCTCGG AGCGATTTAG AGCTCTCTTC 
TCTCTTCGCA ACTTGAAAGG CCCAGGACCT CGCAACGCTC TAATCCTTGC 
ATCCAGAGAC TCATCTAATT TGTTAGCACA TGAAGCTGCA TTTGCATTGG 
GTCAGATGCA AGATGCTGAA GCCATTCCTG CTCTTGAGTC GGTTCTTAAT 
GATATGTCTT TGCATCCAAT AGTACGACAT GAGGCAGCAG AAGCCCTTGG 
AGCTATTGGT TTGGCGGGTA ATGTTAACAT TTTAAAGAAA AGCTTGAGCT 
CGGATCCAGC TCAGGAGGTT CGGGAAACAT GTGAATTAGC TCTCAAAAGG 
ATTGAAGACA TGAGTAACGT TGATGCCGAG AACCAGTCAT CAACGACAGA 
GAAATCACCT TTCATGTCTG TTGACCCAGC AGGCCCAGCT GCGTCTTTCT 
CTTCTGTTCA CCAACTCAGG CAAGTTCTCC TGGATGAAAC AAAAGGCATG 
TATGAGAGAT ATGCTGCACT GTTCGCTCTA AGGAATCATG GTGGAGAGGA 
AGCTGTTTCT GCCATAGTTG ATTCTTTGAG TGCTAGTAGT GCCCTTCTAC 
GTCACGAGGT TGCTTATGTC TTGGGTCAGT TGCAAAGTAA AACTGCTTTA 
GCTACTCTAA GCAAAGTACT TAGAGATGTG AATGAGCACC CAATGGTTAG 
ACATGAGGCT GCAGAAGCGC TTGGTTCTAT TGCTGATGAA CAGAGCATTG 
CTTTGCTAGA AGAATTCTCA AAGGACCCTG AGCCAATTGT TGCACAAAGC 
TGTGAAGTAG CATTGAGTAT GTTGGAATTT GAAAATTCCG GGAAATCGTT 
TGAGTTTTTT TTCACGCAAG ACCCGCTTGT TCACTAAGAA TCTCAATCAT 
TCTTCGTCAA ACATTTACCG ACAAAGGAAA GCAAACATTT TATACAGAGA 
GAGAAGAAAC TGCTACTTTA ACATGTCTTT ATGTACGATT ATAAATAACT 
CTATTCATAT GTTTAAGGTT AAGATTACAT TGTCTTATGG TACGGAAGCT 
TTTCATTGTT GAAGAAAGAG AATCCTTTGT GTTTT

Gene models with high sequence identity

  1. AT3G58180.1 [+] show detail - ARM repeat superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam PBS lyase HEAT-like repeat 1.5e-05
HMMPfam PBS lyase HEAT-like repeat 0.014
HMMPfam PBS lyase HEAT-like repeat 5.7e-05
superfamily Armadillo-type fold 3.3e-42
Gene3D Armadillo-like helical 5.3e-10
Gene3D Armadillo-like helical 7.6e-14
HMMPanther PBS LYASE HEAT-LIKE PROTEIN 9.9e-75
HMMSmart PBS lyase HEAT-like repeat 1.9
HMMSmart PBS lyase HEAT-like repeat 6.9e-06
HMMSmart PBS lyase HEAT-like repeat 0.015
HMMSmart PBS lyase HEAT-like repeat 0.0022
HMMSmart PBS lyase HEAT-like repeat 0.00034
HMMSmart PBS lyase HEAT-like repeat 2.9e-08

See the detailed result >

AT3G58180.1

Model type
Protein coding
Short Description
ARM repeat superfamily protein
Computational Description
ARM repeat superfamily protein; FUNCTIONS IN: lyase activity, binding; INVOLVED IN: biological_process unknown; LOCATED IN: phycobilisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024), PBS lyase HEAT-like repeat (InterPro:IPR004155); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT3G62530.1); Has 1934 Blast hits to 1064 proteins in 388 species: Archae - 226; Bacteria - 670; Metazoa - 295; Fungi - 345; Plants - 90; Viruses - 0; Other Eukaryotes - 308 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL02-07-L07 introduced

  • F09623 - seed::increased size / seed::increased length
  • F13412 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

2 mutant lines found