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  3. RAFL02-07-N23

RAFL02-07-N23

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02250)

full reading [+] show sequence

Nucleotide sequence: RAFL02-07-N23 - full reading 
AATCTCAAAA AGTCTCCGAC ACTCTCTAGA TTTCCTTTGC TCCTTCGTTC 
TGGCCATGGC AATGGCAAAA CTCGCAATTT TCACCACTCT TATGGCCATA 
CTCGTAATGA CATCTCAAGG AAGGATTCCA ACAGAAGGAG GAGAGAAAGA 
AGCAGAGGCT GACAGAATTA CGTCACTTCC AGGTCAGCCT AACGTCACGT 
TCGAGCAGTT TTCCGGCTAC GTCACCGTCG ATAAACTCTC CGGAAGATCA 
CTCTTTTATT GGCTCACTGA AGCTTCTGAC CTCCCTCTCT CCAAACCTCT 
CGTAATTTGG CTCAACGGAG GACCGGGATG TTCGTCGGTA GCGTACGGTG 
CGTCGGAGGA GATTGGACCA TTCAGGATAA GCAAAGGTGG TTCCGGTTTG 
TATCTCAACA AGTTCGCATG GAACTCAATC TCCAATCTCT TGTTCCTCGA 
AGCTCCCGCC GGCGTCGGCT TCTCTTACAC TAACCGCTCC TCCGATCTCT 
TCAACACCGG TGATCGCCGT ACCGCCAAAG ATTCACTTCA GTTTCTTATT 
CAATGGCTTC ACCGGTTTCC GAGATACAAC CACCGGGAAA TCTACATCAC 
CGGCGAGAGT TACGCCGGAC ATTACGTTCC TCAGCTGGCC AAAGAGATCA 
TGAATTACAA CAAACGATCA AAGAATCCGT TAAATCTCAA AGGAATCATG 
GTTGGAAACG CGGTGACGGA CAATCACTAT GATAACCTAG GAACGGTTTC 
GTATTGGTGG AGCCACGCGA TGATCTCTGA TCGGACGTAT CATCAGTTGA 
TAAGCACTTG CGATTTTAGT CGTCAGAAGG AATCTGATGA ATGCGAAACC 
CTTTATTCTT ACGCTATGGA GCAGGAGTTT GGTAACATTG ATCAGTACAA 
CATCTATGCG CCGCCGTGTA ACAAGTCAAG CGACGGTGGT GGTAGCTACA 
ATGGTTCTTC CGGCCGCCGG AGTATGCGGC TTCCTCACCT TCCCCACTCC 
GTATTGAGGA AAATTTCCGG TTATGATCCA TGTACCGAGA GATATGCAGA 
GATCTATTAT AACCGGCCTG ATGTTCAGAA AGCTCTTCAC GCCAACACCA 
CCAAGATTCC GTATAAATGG ACAGCTTGCA GTGAGGTGCT AAACCGGAAT 
TGGAACGACA CAGATTCAAC GGTTCTCCCT ATATACCGGG AAATGATTGC 
CGGCGGAATT AGAGTTTGGG TTTTCAGTGG TGACGTCGAT TCAGTTGTAC 
CAGTGACAGC TACTAGATAC TCACTAGCAA GACTTAGTTT GAGTACCAAA 
CTTCCTTGGT ATCCTTGGTA TGTCAAGAAA CAGGTTGGAG GATGGACGGA 
AGTGTATGAA GGACTAACGT TCGTGACGGT TAGAGGAGCA GGTCACGAGG 
TGCCATTGTT CAAGCCACGT GCTGCTTTTG AGCTTTTTAA GTATTTCTTG 
AGAGGCAAGC CACTTCCAAA GGCTTAAAAA AATTGAAGTC AAGAGAGAGA 
TTGTAACATT TGAAATCATG CCCGAGAAAA ATGAAAATGT AAAGTTTGGG 
TTATGAGATG GTATTTAATT AAATCTAGTC TATTAATG

Gene models with high sequence identity

  1. AT3G02110.1 [+] show detail - serine carboxypeptidase-like 25
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
PatternScan Peptidase S10, serine carboxypeptidase, active site 0
PatternScan Peptidase S10, serine carboxypeptidase, active site 0
FPrintScan Peptidase S10, serine carboxypeptidase 2.3e-26
FPrintScan Peptidase S10, serine carboxypeptidase 2.3e-26
FPrintScan Peptidase S10, serine carboxypeptidase 2.3e-26
FPrintScan Peptidase S10, serine carboxypeptidase 2.3e-26
HMMPanther SERINE CARBOXYPEPTIDASE II (CARBOXYPEPTIDASE 8.3e-273
HMMPanther Peptidase S10, serine carboxypeptidase 8.3e-273
HMMPfam Peptidase S10, serine carboxypeptidase 5e-140
superfamily alpha/beta-Hydrolases 4.9e-138
Gene3D no description 4.9e-135

See the detailed result >

AT3G02110.1

Model type
Protein coding
Short Description
serine carboxypeptidase-like 25
Computational Description
serine carboxypeptidase-like 25 (scpl25); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT4G30610.1); Has 3637 Blast hits to 3574 proteins in 364 species: Archae - 0; Bacteria - 191; Metazoa - 636; Fungi - 868; Plants - 1530; Viruses - 0; Other Eukaryotes - 412 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL02-07-N23 introduced

  • F12528 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found