1. Home
  2. Full-length cDNAs
  3. RAFL02-08-B13

RAFL02-08-B13

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00111)

full reading [+] show sequence

Nucleotide sequence: RAFL02-08-B13 - full reading 
CTAGATCTAA CCCCAGCCGT CAGATCAGAT TGATCGGGCA ATCGCTTCTA 
GACCGTTGGA ATCAAGCAAT GGTAGAGGTA GAATCGTATT TGTGGGTATC 
TAGAAGAGGC GTTAGGATTG TCTCCAAGCT GGGTGTTTTT TCATCTTGAT 
GGCCAACTAA TCGAATCTCC TACTCTAAAG ATATTTTTGT TTATTTCTGT 
CATGTGTGAT TTGGTCGCGC GTACGGGTCG TCTCCAGCAG CGGTACGAGG 
ATGGCTCTCG TCTCGTCGCC GGGTGTATTC CGTTTAGGTA TGTAAATTCT 
GACAAAGATG GTAATTCTGA ATCTGGGAAA GTGATTCAAG TGTTGATGAT 
CAGCTCGTCT AGTGGACCTG GACTTTTGTT TCCCAAGGGA GGATGGGAGA 
ATGATGAGAC AGTCAGGGAG GCTGCAGCGA GGGAAGCAGT GGAAGAAGCA 
GGAGTCCGTG GGATTCTTAT GGATTTTTTG GGGAATTATG AGTTCAAGAG 
CAAATCACAC CAAGATGAGT TTAGCCCAGA AGGTTTATGT AAAGCGGCAA 
TGTACGCGTT GTATGTGAAA GAAGAGCTAG CGACGTGGCC GGAACATGAG 
ACGAGAACAC GTAAATGGCT GACAATTGAA GAAGCGGTAG AGAGTTGCAG 
GCACCCTTGG ATGAAGGACG CATTGGTGGA AGGATTCTGT AAATGGCATA 
AGGAGAAGAT GGTTAAAGGA GAGGAGATAA CTGGTGAACA TTGAAGCAAA 
TGTGCATAAA CCTCTGAGCG TTGGTTTCAT TCCTTTCGAT TTTGTTTTTA 
CCTTTTTGTT TTTGTTTTTG AAGTCTTATG CATGGATAAT CTCTTGTGAC 
TGCGAAACGT AATAGTTTCG AAGATTTAAA GTTCAATTAT TGCCCTATTT 
TCAC

Gene models with high sequence identity

  1. AT3G12600.1 [+] show detail - nudix hydrolase homolog 16
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam NUDIX hydrolase domain 1.5e-13
superfamily NUDIX hydrolase domain-like 2.7e-22
PatternScan NUDIX hydrolase, conserved site 0
HMMPanther DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROL 5.2e-20
Gene3D NUDIX hydrolase domain 1.9e-14

See the detailed result >

AT3G12600.1

Model type
Protein coding
Short Description
nudix hydrolase homolog 16
Computational Description
nudix hydrolase homolog 16 (NUDT16); FUNCTIONS IN: hydrolase activity; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797), NUDIX hydrolase, conserved site (InterPro:IPR020084), NUDIX hydrolase domain (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: nudix hydrolase homolog 12 (TAIR:AT1G12880.1); Has 1169 Blast hits to 1168 proteins in 345 species: Archae - 0; Bacteria - 470; Metazoa - 236; Fungi - 123; Plants - 235; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL02-08-B13 introduced

  • F03810 - Specific phenotypes were NOT observed.
  • F28505 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found