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  3. RAFL02-08-F07

RAFL02-08-F07

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00169)

full reading [+] show sequence

Nucleotide sequence: RAFL02-08-F07 - full reading 
AGAAGAAGAC ATGACAAGTG AAGTTCTTCA AACAATCTCA AGTGGATCAG 
GTTTTGCTCA GCCACAGAGC TCATCAACCC TGGATCATGA TGAATCTCTC 
ATCAATCCTC CTCTTGTTAA GAAAAAGAGA AATCTCCCTG GAAATCCTGA 
TCCGGAAGCT GAAGTGATAG CTTTATCCCC CACGACCTTG ATGGCTACGA 
ACCGGTTCCT ATGTGAGGTA TGTGGCAAAG GTTTCCAAAG AGACCAAAAC 
TTACAGCTTC ATCGGCGAGG ACATAATCTT CCATGGAAGT TGAAGCAGAG 
GACAAGCAAA GAAGTGAGAA AACGTGTCTA CGTTTGCCCC GAGAAGACAT 
GTGTCCACCA TCACTCCTCT AGAGCTCTAG GCGATCTCAC TGGAATCAAA 
AAGCATTTTT GCCGGAAACA CGGGGAGAAG AAGTGGACGT GCGAGAAATG 
TGCTAAGAGA TACGCAGTCC AATCTGATTG GAAAGCTCAT TCCAAGACTT 
GTGGTACTAG AGAGTACCGT TGCGATTGTG GCACCATTTT CTCAAGGCGA 
GACAGCTTTA TCACTCATAG AGCTTTCTGC GATGCCTTAG CGGAAGAAAC 
CGCTAAGATA AACGCAGTGT CTCATCTCAA CGGTTTAGCC GCGGCTGGAG 
CCCCAGGATC AGTTAATCTC AACTATCAAT ATCTCATGGG AACATTCATC 
CCACCGCTTC AACCATTTGT ACCACAACCG CAAACAAATC CAAACCATCA 
TCATCAACAT TTTCAGCCAC CAACTTCTTC GTCGCTCTCT CTATGGATGG 
GACAAGATAT CGCGCCGCCT CAACCGCAAC CGGACTACGA TTGGGTTTTT 
GGAAACGCTA AGGCAGCGTC TGCTTGCATT GATAATAATA ATACTCACGA 
TGAGCAGATT ACGCAAAACG CAAACGCAAG TTTGACCACT ACCACTACTC 
TCTCTGCCCC TTCTTTATTC AGCAGCGACC AACCACAAAA CGCAAACGCA 
AATTCAAACG TGAATATGTC CGCGACAGCT TTACTACAGA AAGCTGCTGA 
AATTGGCGCT ACTTCTACAA CAACCGCAGC GACCAATGAC CCATCAACGT 
TTCTTCAAAG TTTCCCGCTT AAATCCACCG ATCAAACCAC CAGTTATGAC 
AGTGGCGAAA AGTTTTTTGC TTTGTTCGGG TCTAACAACA ACATTGGGTT 
AATGAGTCGT AGTCATGATC ATCAAGAGAT CGAGAACGCT AGAAATGACG 
TTACGGTTGC GTCTGCCTTG GATGAATTAC AGAATTACCC TTGGAAACGT 
AGAAGAGTTG ATGGTGGAGG TGAAGTGGGT GGAGGAGGGC AAACTCGGGA 
TTTCCTCGGG GTTGGTGTAC AAACGTTGTG CCATCCATCG TCTATCAATG 
GATGGATTTG AAAGAGTTTA AAAATTTCGG GGTTAATGCA TAAATTACGT 
AAAAGAAGAA GGAATCTTTT GTCATTTCCA CCATTTTCTA AGATAACATA 
TGTATATGGT AATGGAAGTT GTTTTCTTTT ATT

Gene models with high sequence identity

  1. AT5G44160.1 [+] show detail - C2H2-like zinc finger protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily C2H2 and C2HC zinc fingers 0.000051
superfamily C2H2 and C2HC zinc fingers 0.00015
ProfileScan Zinc finger, C2H2-type 11.51
HMMPanther UNCHARACTERIZED 0.00000000017
HMMPanther SERINE/THREONINE-PROTEIN KINASE RIO 0.00000000017
PatternScan Zinc finger, C2H2-type 0

See the detailed result >

AT5G44160.1

Model type
Protein coding
Short Description
C2H2-like zinc finger protein
Computational Description
nutcracker (NUC); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: primary root apical meristem, stem vascular system, embryo, root, embryonic root; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2 and C2HC zinc fingers superfamily protein (TAIR:AT1G03840.1); Has 52823 Blast hits to 19358 proteins in 362 species: Archae - 0; Bacteria - 0; Metazoa - 50211; Fungi - 300; Plants - 764; Viruses - 0; Other Eukaryotes - 1548 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL02-08-F07 introduced

  • F09609 - Specific phenotypes were NOT observed.
  • F29328 - rosette leaf::decreased size / stem::abnormal / flower::abnormal / fruit::abnormal / rosette leaf::decreased size / rosette leaf::increased width / cauline leaf::present in fewer numbers in organism / stem::abnormal / fruit::abnormal

Mutant lines with disrupted or induced

2 mutant lines found