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  3. RAFL02-08-H09

RAFL02-08-H09

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02254)

full reading [+] show sequence

Nucleotide sequence: RAFL02-08-H09 - full reading 
GAGGAGAAGA TAAATCCGAT CTAGGTCTCT TCTTCCCCAA TCTCTCTGTG 
TCTCTCTCGA TCGAAGAAAG AAGACAATGG ACAAAGGCAA AGCAGTGATG 
GGTACTGGTC GGAGATGGGC CGTCGAATTC TCCGATCAAT CTACTGTTCC 
ATCTTCCCGT GACATCCTCG ATCCACCTGG CTTCTCTCGT GCCTCTCAGG 
AACAGGATGA TTCAGCAAAC AGCCGCCAAA AGAAAGACGC TGAAGCTACT 
TGGAAACTTC AGAAAGCGTG GGAAGTAGCG CAATCTCCAT TTAAGAATTT 
GATGATGATG GGTTTCATGA TGTGGATGGC TGGAAACACA GTTCATCTTT 
TTAGTATTGG TATTACTTTC TCTGCTCTTT GGCAGCCTAT CAGTGCTCTT 
CAGAGTGTTG GAAAGATTTT TGAGCCATTC AAGGATAACA AAGTGGAACT 
ACTTATGCCG AAATTAGTGT TCCTTGCCCT AAACCTTGGA GGGCTAGCTT 
TGGGTGTCTG GAAGCTTAAC ACTTTGGGGC TTCTTCCAAC ACATGCATCA 
GATTGGGTTT CATCTCTACC CCCTCCTCAG GAAGTTGAAC ACTCGGGCGG 
AGGATTTGTT TTCCACTGAT GAATCAGCGT CTCTTGTATT TTAAAATAAT 
CCGCTAAAAC CGCGCGACAA CGACAACACT TTTGTGAGAT AACTGCAACA 
GTTACTTAAG TGATATGAAC CTCCCTCATC TTATGATATT CTTGTAGCAT 
TTTCAAAACT CAGAAACCAT AGTTTTTACA CTTTTTAGTA TGATGCTCAT 
TGTTCATCAT AACTATGAAT GTATTATTGG CACTGAAGGG ACCTTATCTC 
CC

Gene models with high sequence identity

  1. AT5G10780.1 [+] show detail - CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP017207, transmembrane protein 85...
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Protein of unknown function DUF1077 2.9e-41
HMMPanther SUBFAMILY NOT NAMED 8e-142
HMMPanther Protein of unknown function DUF1077 8e-142
HMMPIR Uncharacterised conserved protein UCP017207, transmembrane protein 85 2.2e-84

See the detailed result >

AT5G10780.1

Model type
Protein coding
Computational Description
CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP017207, transmembrane protein 85 (InterPro:IPR016687), Protein of unknown function DUF1077 (InterPro:IPR009445); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL02-08-H09 introduced

  • F07922 - Specific phenotypes were NOT observed.
  • F13102 - Specific phenotypes were NOT observed.
  • F13508 - Specific phenotypes were NOT observed.
  • F15013 - Specific phenotypes were NOT observed.
  • F24001 - Specific phenotypes were NOT observed.
  • F24014 - Specific phenotypes were NOT observed.
  • F25716 - Specific phenotypes were NOT observed.
  • F29826 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

12 mutant lines found