1. Home
  2. Full-length cDNAs
  3. RAFL02-09-J03

RAFL02-09-J03

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00099)

full reading [+] show sequence

Nucleotide sequence: RAFL02-09-J03 - full reading 
AGAGATACAA AGCAATAGAA CAACAAGAAC AAGAAAACAG AGAAAAAAAC 
AATGGCTGCC TTGTCGGATA AGTTAGCGGA TGCTTACCAG AACGCAAGGC 
CGAGATATCC GATCGATTGG TTCACGAAAC TTGCTGCTCG AACCGGTCAG 
CACAAATCAG CTTGGGATGT TGGTACTGGC AACGGTCAAG CAGCTATTGG 
TCTTGCAGAG TATTTCGAGA AAGTTACAGC AACCGACATA AACGAAGCAC 
AGTTAAAACG AGCGGTAAAA CACGAAAGAA TCAGTTACCA TCACACTCCC 
ACAACAATGT CCGAAGACCA AATGGTTGCT CTAGTCGGCG GAGATAACTC 
CGTTGATCTA ATCGTGGCAG CACAAGCCGT TCACTACTTC GATCTCGCAC 
CATTCTACAA CGTAGCAAAA CGTGTTCTTC GCAAAGAAGG AGGATTAATC 
GCAGTTTTTG TCTACAACGA CATAATCATC TCTCCTGAAG TTGATTCCAT 
CATGAAACGT CTTGTGGACT CCACGTTCCC GTTTAGAACT CCTGTAATGA 
ATCTTGCTTT CGACGGTTAT AAAACGTTGC CGTTTCCGTT TGAAAGTATA 
GGGATGGGAT CAGAAGGGAA GCCTATAATG CTTGACATTC CTCATAAGCT 
ATCGCTTAAA GGGTTTATCG GTTTCTTGAG ATCGTGGCAG CCCGCAATGA 
AAGCTAAAGA ACGTGGAGTT GAGCTTGTGA CTGAAGATTT GATCTCCAAA 
TTTGAAGATG CTTGGGGTGA TGATGATGAT GTTAAAGATA TTTTCTACAA 
AGCTCATATG ATTGTTGGAA AACTTTCGGC TTCAGATATA GAGCGGCATC 
GAAAGAGATT TGATACGAAC TGCGTAGTTA CAACACTAAA GGATCATAAC 
AACTCGGCTG TTATTGCTTC AGTGACTGCT GCTGCATTTG CTGGAGTGGC 
GGCTTACTGT GCTTACTCTG CAAGGAAGAA CAGTTAGATC CTTTGAAGGA 
CAAAGAAACG GTTTTCTGAA TCTAGTGAAT GAAATCTTTT TTATTTTACA 
TGTTGACATG TTGTCATGTA TTTATTTATG TCATTGATAT GAGATGGTTA 
AGTAATATCT AAAGATTTAA GAGTC

Gene models with high sequence identity

  1. AT1G55450.1 [+] show detail - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Methyltransferase type 11 1.1e-11
superfamily S-adenosyl-L-methionine-dependent methyltrans 1.4e-20
Gene3D no description 1.7e-13

See the detailed result >

AT1G55450.1

Model type
Protein coding
Short Description
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Computational Description
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: response to salt stress; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT3G54150.1); Has 1000 Blast hits to 995 proteins in 384 species: Archae - 6; Bacteria - 568; Metazoa - 69; Fungi - 129; Plants - 164; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL02-09-J03 introduced

  • F14544 - seed::increased size / seed::increased length
  • F24827 - seed::increased size
  • F25036 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found