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  3. RAFL02-09-P08

RAFL02-09-P08

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02263)

full reading [+] show sequence

Nucleotide sequence: RAFL02-09-P08 - full reading 
AGTTAAAAGG AAAAAAAAAA AAAATTCTTT GAGATGAGAC TTGTTCTCTC 
TGGTGCCTCT TCTTTCACCT CCAACCTTTT TTGTTCCTCC CAACAGGTCA 
ATGGAAGAGG AAAAGAACTG AAAAACCCAA TTTCTCTAAA CCACAACAAA 
GATTTGGACT TTCTGTTAAA GAAGTTAGCT CCGCCACTCA CGGCGGTTTT 
ACTTGCTGTT TCACCCATCT GTTTCCCTCC AGAATCTCTT GGGCAGACTT 
TGGATATACA GAGAGGAGCT ACATTGTTTA ATAGAGCTTG TATCGGGTGT 
CATGATACAG GTGGAAACAT TATTCAACCT GGTGCAACGC TTTTCACAAA 
AGACCTCGAA AGAAATGGAG TTGATACTGA GGAAGAAATA TATCGTGTTA 
CCTACTTTGG AAAGGGAAGA ATGCCGGGAT TTGGTGAGAA ATGCACACCG 
AGAGGACAAT GTACCTTTGG ACCGCGGTTG CAGGACGAAG AAATCAAGCT 
TCTCGCTGAA TTTGTAAAGT TTCAAGCTGA CCAAGGCTGG CCAACTGTAT 
CTACGGACTA GCGACTAGGC ATTCTTCGTC TTGTGAGCGT TTTTGTAATC 
CAATTAATCC ATAGGGCTGT ATCTACTTAC ACTTATAACA ATTCCTTCTG 
GGAGGTTTCA TTGCAATTGC TTATGCTCC

Gene models with high sequence identity

  1. AT5G45040.1 [+] show detail - Cytochrome c
    E-value: 0; Score: 99.85

 

InterPro Scan Digest

Program Description E-value
superfamily Cytochrome c domain 5.2e-17
ProfileScan Cytochrome c domain 11.262
Gene3D Cytochrome c domain 4.1e-14
HMMPfam Cytochrome c, class I 2.2e-06

See the detailed result >

AT5G45040.1

Model type
Protein coding
Short Description
Cytochrome c
Computational Description
Cytochrome c; FUNCTIONS IN: electron carrier activity, iron ion binding, heme binding; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome c, class I (InterPro:IPR003088), Cytochrome c domain (InterPro:IPR009056); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL02-09-P08 introduced

  • F29411 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found