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RAFL02-10-D09

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00166)

full reading [+] show sequence

Nucleotide sequence: RAFL02-10-D09 - full reading 
AGACCTCGGC CTCCATTGCC CTATGCAGTG ATACCTAACA TGCCTGGACG 
CTTAAGACCT GCTTCCCCGT ACATTGGAAA TGTGCAGGGT CCTCGAGGTT 
CACTTATTGG AAATTATCCG TATCAGCAAC CACTTCCATA TAACTACCAG 
CAAGGAGTTG TCTATCCTTA TGGAGTAACC GCTTATGGAC CCGAGTACAT 
GTACTCGCAA TCACAGGGTT TATATAGTCC ATACATGGGT CAGCAATACC 
TTCAGGTCTA TGGAGTACCT GGAGCAGTGA ATTCACCCGT TTATCAATAC 
GGGCAACTAA GTCAGACTAT TCCTAATGGC CATGGTTATA CAGCAGTTCA 
AGGCTATTCG GTTCCAGGAA GCCATATTCT GCAGCTTGGT GGACCCACTG 
TCAGTACGAT GACCACTTCA TCTATGCCTG CTCTTCAAGC TCCTTACCCT 
TCAGGTATAC CAGGCCCTGC TCCCGTACAG TCGCATATCA TTGTCCACTC 
CCCTCAATTT ATGCAGAGTA CCGCTTCTGA CCAAACAACA AGTTATTCTT 
GAAGACTGAA GAGAAAAGGA AGTTAAGTTA GTGAAACTGC TACTGGAGGT 
GTTGCAGAAG AGGCTTCCTG TTTTATTAAG TCTTGCACGT TATTTATCTT 
GCATCCTTAA GGTTATGTAA AATAGTCTTG CTCACTGGGA AGGCGCAGCG 
CAGAAGGAAA AAAAAAAGCA AAGGAAATTG GAGTGTCAGG GTTTATGCTT 
CCGTTTTCTT ACCCATCCAT CAATGTGTAT AAAACACAGC CACAAAAAAG 
CTGCTGGCTC GAGCTTGGGT TGAGTTTGAA GGCACCATAG CTGGTTTCCC 
TTGGAGGGGA AGACCAGTAG TAATAAGTTG GTGTACAATA TGCATATATT 
TATACACACA TACACAAGCA TATACATATG GTAGAATCAA AATCTGATTC 
TTTTCAAGTC TGAAGTCGTA ATACCACTAC ACTTCCTTCA GGTGCAGGAG 
TGTAGTGAGT AACATTGATA GGTATATAGC CTTTGTCTTT AAGTCCTGCA 
TTGTAAGTAA AACATGTTCA TCATGTCCTT TTCTGTGATT GTGCATATTT 
AGGGTTCTCT CTTCTTCCAT CTGAACACAC TGGGATTGTT TACTGAAGCT 
TACTTCAAAG TATGGAGTAG GCTCTTTTCT C

Gene models with high sequence identity

  1. AT1G76460.1 [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
    E-value: 0; Score: 99.92

 

InterPro Scan Digest

Program Description E-value
HMMPanther RNA-BINDING PROTEIN-RELATED 9e-43
HMMPanther RNA-BINDING PROTEIN 9e-43

See the detailed result >

AT1G76460.1

Model type
Protein coding
Short Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G20880.2); Has 4261 Blast hits to 4252 proteins in 371 species: Archae - 0; Bacteria - 0; Metazoa - 1989; Fungi - 541; Plants - 1112; Viruses - 30; Other Eukaryotes - 589 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL02-10-D09 introduced

  • F17651 - rosette leaf::abnormal / cauline leaf::abnormal / flower::abnormal / stem::present in fewer numbers in organism / stem::abnormal
  • F26847 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found