1. Home
  2. Full-length cDNAs
  3. RAFL02-10-H11

RAFL02-10-H11

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00131)

full reading [+] show sequence

Nucleotide sequence: RAFL02-10-H11 - full reading
ATAAACATAG ATTCCTCTAT ATTCAGCCCC GGCTATCAGA TCGTCTTCTT 
TATCGCTCCT CTAATTATAT TCATCTCGAG AGACGAGAGC TAAAGAACTA
CTTCCAAAAA AATGCCGATT GCTGAGCTTG CTGTAATCAA AACAGTGGGT
GGGCCTCTGA TAGCGGCTGC TCTTGGAGTT GGAGCCCAAG TCATTTACGA
CGGCTTCAGA AAAGGAAAAG ATACATCTAT CATAAACCGT CTCGGCCGTA
CAATGGAAAG TATCAGTCCG GTGCGGGATC GAATCGGTAA GCTCAGTAAT
GTGGAAGGTA AACCATTTAG GGAAGTCCAC GAAAGTCTTA CGCGTCTCCT
TGAAGATGCG AAATCTATTA TTGAGAAATA TTGGAAACTC AGATGGAGCA
GACACGTTTG CAGGAAGTAC AGGTACATCA AAAAACTCGA ATCGATAGAA
CTTGAATTAG TAAGGGTAGC ACGTGAGATA CAAGTCCACC AATGGACCGA
TATCAAAGAA ATGAAGGCGA TACAAGTCCA CCAATGGACC GATATCAAAG
AAATGAAGGC GATACAAGTC GACCAATGGA CCGATATCAA AGAAATGAAG
GCGATACAAG TCGACCAATG GATCGATATC AAAGAAATGA AGGCGATACA
AGTCGACCAA TGGACCGATA TCAAAGAAAT GAAGGCCCAG ATATCTGAAA
AGCATAATAA ATGAATCAAT ATCTAAAATC TGGTGTTTTT CTCTCTTTCT
TCTTCCCAAC AATGATTGAA AAACTCTTTC TTGTTATGAA TAAAGATGGA
TGCCCATTAT AAGGCCCATC ATCTAAGCCC ATCATCTAGA TGTTTCTAGG
GTTTTACCCT TTCCTTGTAC TCCTATATAA AGAACCCTTT ATCTCAATGG
AATAACACAC TCATTTCTTC T

Gene models with high sequence identity

  1. AT3G50480.1 [+] show detail - homolog of RPW8 4
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Powdery mildew resistance protein, RPW8 domain 3.4e-54
ProfileScan Powdery mildew resistance protein, RPW8 domain 13.951

See the detailed result >

AT3G50480.1

Model type
Protein coding
Short Description
homolog of RPW8 4
Curator Summary
Homolog of RPW8
Computational Description
homolog of RPW8 4 (HR4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to other organism; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Powdery mildew resistance protein, RPW8 domain (InterPro:IPR008808); BEST Arabidopsis thaliana protein match is: homolog of RPW8 3 (TAIR:AT3G50470.1); Has 106 Blast hits to 90 proteins in 15 species: Archae - 14; Bacteria - 4; Metazoa - 2; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL02-10-H11 introduced

  • F14621 - seed::increased size / seed::increased length
  • F25444 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

7 mutant lines found