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  3. RAFL02-10-L11

RAFL02-10-L11

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00168)

full reading [+] show sequence

Nucleotide sequence: RAFL02-10-L11 - full reading 
ACCAAACAGC AAAACAAGAA GAACAACAAC ACTAAGCAAA AAAGAAAAGC 
TCAAGCCGAG AGAGACAATG GCATCAACAT TCACGAGCTC AAGCAGTGTT 
CTTACCCCAA CAACATTCCT TGGCCAGACT AAAGCCTCAA GCTTTAACCC 
CCTTCGTGAT GTTGTCTCTC TCGGATCTCC CAAGTACACT ATGGGAAATG 
ATCTTTGGTA TGGACCTGAC AGAGTGAAGT ACTTAGGACC CTTTTCCGTT 
CAAACTCCGT CTTACCTCAC CGGAGAATTC CCTGGCGATT ATGGTTGGGA 
CACCGCCGGT TTATCCGCAG ACCCTGAAGC CTTTGCCAAA AACAGAGCTC 
TTGAGGTGAT CCATGGGAGA TGGGCAATGT TGGGAGCTTT TGGTTGCATA 
ACCCCTGAAG TTCTTCAAAA GTGGGTCCGT GTGGACTTCA AAGAACCAGT 
CTGGTTCAAA GCCGGTTCAC AAATCTTCTC CGAAGGCGGT TTGGACTACT 
TAGGCAACCC AAACCTAGTC CATGCTCAGA GCATTTTAGC CGTCCTTGGC 
TTCCAAGTCA TCCTCATGGG TTTGGTTGAA GGTTTCCGCA TCAACGGTCT 
TGATGGTGTT GGCGAAGGCA ACGACTTGTA CCCCGGTGGG CAATACTTTG 
ACCCGTTGGG TCTCGCTGAT GATCCAGTTA CTTTTGCTGA GCTTAAGGTG 
AAAGAGATCA AGAACGGAAG ATTGGCTATG TTCTCTATGT TTGGCTTCTT 
TGTTCAAGCC ATTGTTACTG GAAAAGGTCC TTTGGAGAAT CTCCTTGACC 
ATCTTGACAA CCCTGTTGCT AACAATGCGT GGGCTTTCGC AACTAAGTTT 
GCACCTGGAG CTTAAATTTT CAAGTCTTGA TGTGATTCTT GTAATGATAT 
GAACATAACC TTTCTTGTTC CTCTCAAATT ACAAATCTTC TATTTGCTAT 
GC

Gene models with high sequence identity

  1. AT5G54270.1 [+] show detail - light-harvesting chlorophyll B-binding protein 3
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther Chlorophyll A-B binding protein 2.4e-159
superfamily Chlorophyll a-b binding protein 8.4e-77
HMMPfam Chloroa_b-bind 3.9e-49

See the detailed result >

AT5G54270.1

Model type
Protein coding
Short Description
light-harvesting chlorophyll B-binding protein 3
Curator Summary
Lhcb3 protein is a component of the main light harvesting chlorophyll a/b-protein complex of Photosystem II (LHC II).
Computational Description
light-harvesting chlorophyll B-binding protein 3 (LHCB3); FUNCTIONS IN: structural molecule activity; INVOLVED IN: photosynthesis; LOCATED IN: light-harvesting complex, thylakoid, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: photosystem II light harvesting complex gene 2.1 (TAIR:AT2G05100.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL02-10-L11 introduced

  • F00830 - rosette leaf::decreased size / rosette leaf::abnormal / rosette leaf::increased width / sporophyte vegetative stage::decreased speed
  • F02439 - seed::increased length
  • F02650 - Specific phenotypes were NOT observed.
  • F03420 - Specific phenotypes were NOT observed.
  • F03434 - Specific phenotypes were NOT observed.
  • F03826 - seed::increased size / seed::increased length
  • F05008 - Specific phenotypes were NOT observed.
  • F05911 - seed::present in fewer numbers in organism / fruit::decreased length / stem::present in greater numbers in organism
  • F07132 - Specific phenotypes were NOT observed.
  • F07726 - Specific phenotypes were NOT observed.
  • F08628 - rosette leaf::increased width / sporophyte vegetative stage::decreased speed
  • F09942 - Specific phenotypes were NOT observed.
  • F10601 - Specific phenotypes were NOT observed.
  • F12833 - Specific phenotypes were NOT observed.
  • F13147 - Specific phenotypes were NOT observed.
  • F14539 - seed::increased size / seed::increased length
  • F15832 - Specific phenotypes were NOT observed.
  • F17402 - Specific phenotypes were NOT observed.
  • F17834 - Specific phenotypes were NOT observed.
  • F18832 - Specific phenotypes were NOT observed.
  • F22536 - Specific phenotypes were NOT observed.
  • F22607 - rosette leaf::dark green / rosette leaf::decreased size / rosette leaf::increased width / rosette leaf::present in fewer numbers in organism / cauline leaf::present in fewer numbers in organism / stem::decreased thickness / whole plant::decreased height / stem::present in fewer numbers in organism
  • F23401 - Specific phenotypes were NOT observed.
  • F23538 - Specific phenotypes were NOT observed.
  • F25009 - Specific phenotypes were NOT observed.
  • F25835 - Specific phenotypes were NOT observed.
  • F26303 - Specific phenotypes were NOT observed.
  • F26542 - seed::increased size / seed::increased length
  • F26615 - rosette leaf::desaturated green / stem::desaturated green / cauline leaf::desaturated green / fruit::abnormal / rosette leaf::desaturated green / stem::desaturated green / cauline leaf::desaturated green / cauline leaf::abnormal / fruit::abnormal
  • F26829 - Specific phenotypes were NOT observed.
  • F27512 - Specific phenotypes were NOT observed.
  • F28424 - Specific phenotypes were NOT observed.
  • F28522 - seed::increased size / seed::increased length
  • F28634 - Specific phenotypes were NOT observed.
  • F30141 - Specific phenotypes were NOT observed.
  • F30341 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

36 mutant lines found