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  3. RAFL02-10-N23

RAFL02-10-N23

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00172)

full reading [+] show sequence

Nucleotide sequence: RAFL02-10-N23 - full reading 
CTTTCCCCTA AGTCTTGGTT CTTCTTCTCT CTAATACGAG AAGAAAAAGG 
CGAAAACCTC GCCAATCCGA TTACGCGAAA AATCAAAGGT TTTTGGATAT 
GGCGTCGAAG CGGATCTTGA AGGAATTGAA GGATCTCCAG AAGGATCCAC 
CTACATCATG TAGCGCAGGT CCTGTTGCTG AAGACATGTT TCACTGGCAG 
GCAACGATAA TGGGTCCTTC AGAGAGTCCT TATGCTGGAG GTGTTTTCCT 
TGTAACCATC CATTTCCCTC CGGATTACCC ATTCAAGCCT CCTAAGGTGG 
CCTTTAGGAC CAAGGTGTTC CATCCCAACA TTAACAGCAA CGGTAGCATT 
TGCCTCGACA TCTTGAAGGA GCAGTGGAGT CCTGCGCTCA CCATTTCCAA 
GGTGCTGCTA TCGATCTGTT CTTTGTTAAC CGATCCAAAC CCGGATGATC 
CTTTGGTGCC CGAGATAGCT CACATGTACA AGACTGACAA GAACAAGTAC 
GAGTCCACTG CACGAAGCTG GACTCAGAAG TATGCCATGG GCTAAATGGA 
AAATCCCACC TACTAAATTA TCTCTTTATG AAGAAAAAAA TCTGCCTTAA 
TTTCTATGTA TGATTCGATA GACATCTCTT TGTGTCCTTT TAACTTTCTG 
AAGACAGGAC CAAATGAAGT GGGTCTTGTT TTAAACGAAA CAAAAAAAAA 
CATCATCTTT GCG

Gene models with high sequence identity

  1. AT5G53300.4 [+] show detail - ubiquitin-conjugating enzyme 10
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily Ubiquitin-conjugating enzyme/RWD-like 3.9e-68
Gene3D Ubiquitin-conjugating enzyme/RWD-like 9.2e-61
PatternScan Ubiquitin-conjugating enzyme, E2 0
HMMSmart Ubiquitin-conjugating enzyme, E2 1.3e-79
HMMPfam Ubiquitin-conjugating enzyme, E2 1.3e-52
HMMPanther UBIQUITIN-CONJUGATING ENZYME E2 3.7e-109
HMMPanther UBIQUITIN-CONJUGATING ENZYME E2 3.7e-109
ProfileScan Ubiquitin-conjugating enzyme, E2 48.399

See the detailed result >

AT5G53300.4

Model type
Protein coding
Short Description
ubiquitin-conjugating enzyme 10
Curator Summary
Encodes a ubiquitin conjugating enzyme.
Computational Description
ubiquitin-conjugating enzyme 10 (UBC10); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin conjugating enzyme 9 (TAIR:AT4G27960.1).
Link
InterPro Scan - TAIR

Mutant lines with RAFL02-10-N23 introduced

  • F11043 - Specific phenotypes were NOT observed.
  • F13251 - Specific phenotypes were NOT observed.
  • F21736 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found