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  3. RAFL03-01-D05

RAFL03-01-D05

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02270)

full reading [+] show sequence

Nucleotide sequence: RAFL03-01-D05 - full reading 
GACGACACAA AAACCTTGCA TTTGCATCCA TGGCGTCGAT GCCGAGCAAA 
CTTCTTCCAG TCCTAGTCTG CTACGTTTTT CTTTTCCCCT TTGCATCATC 
ATCTGATTAT TCTGGGGTAT CTCTTCCATC TTCGTCGCCT AAAGTCTCGG 
TGGGCCTGTA CTACGAGTCT CTCTGTCCCT ACTGCTCTTC CTTCATTGTT 
AACCACCTCG CGAAGCTCTT CGAAGACGAT CTCATATCAA TCGTCGATCT 
CCATCTCTCT CCGTGGGGCA ATACCAAGCT CCGTTCCGAT AACGTCACTG 
CCGTTTGCCA GCATGGGGCA TTTGAATGCT TCTTGGATAC CGTAGAAGCT 
TGTGCAATTG ATGCTTGGCC TAAAGTAAGC GATCATTTCC CGTTCATATA 
CTGTGTCGAG AAGTTGGTGA CTGAACATAA GTATGACAAG TGGGAGACGT 
GTTATGAGAA GCTCAATCTC AACTCGAAAC CTGTTGCAGA TTGTCTCAGC 
AGTGGACATG GGAATGAGCT TGCTTTGCAC TATGCTGCAG AAACGAATGC 
GCTTCAGCCT CCTCACAAGT ATGTGCCCTG GGTAGTCGTG GATGGTCAGC 
CACTTTATGA GGACTATGAA AACTTCATAA GCTACATCTG CAAGGCTTAC 
AAAGGTAATA AAGTACCTGG CGCATGTACC AAATATGCAA CCGGCAACTT 
CATTCGTAGT GTCAAATTGA AACGCTCCCC TCTGGTGTCC TGGAAAGGCG 
TGAATAAGAT GTGGGATGTG TTGGAACGTA TCACAACCTC TTTATCGTCA 
TACATCGACA TCACCGGCCT GCTATGAACA CTTCCTGTAT CTTTTTCCCA 
TGTAACAAAC CACCCCAAAA AGCTATCTAG ATTCTGATAT TTAATGAATG 
TGTGTAATCT TTATGTTTCA TCAAAATGTA TGTTTGTTGG GTTGTGAGAG 
GCCTTTCAAG AATCACATGT TGGGTAAAAA ACCTATTTCG GTTTAGACGG 
GTTTTGTTTC TCTTATTTGT TTCGGTGAAG TTGTAGACTG TAGTATGAAA 
GGAGCCTATC AGGGTTGACG ATGGAACAGT AGTGAGGACC GTGACCCACT

Gene models with high sequence identity

  1. AT1G07080.1 [+] show detail - Thioredoxin superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily Thioredoxin-like fold 1.4e-09
HMMPfam Gamma interferon inducible lysosomal thiol reductase GILT 5.3e-27
HMMPanther LYSOSOMAL THIOL REDUCTASE-RELATED 8.8e-134
HMMPanther Gamma interferon inducible lysosomal thiol reductase GILT 8.8e-134

See the detailed result >

AT1G07080.1

Model type
Protein coding
Short Description
Thioredoxin superfamily protein
Computational Description
Thioredoxin superfamily protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Gamma interferon inducible lysosomal thiol reductase GILT (InterPro:IPR004911), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: gamma interferon responsive lysosomal thiol (GILT) reductase family protein (TAIR:AT5G01580.1); Has 470 Blast hits to 463 proteins in 91 species: Archae - 0; Bacteria - 0; Metazoa - 320; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL03-01-D05 introduced

  • F09023 - Specific phenotypes were NOT observed.
  • F22703 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found