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  3. RAFL03-01-D08

RAFL03-01-D08

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00048)

full reading [+] show sequence

Nucleotide sequence: RAFL03-01-D08 - full reading 
AACAGCTTCA TCGTTTTATC TTCCAATCAA AGCAGCTCAA ATCAAGCTCG 
CAAAGATGAT GCACATGACC TTCTACTGGG GAATCAAAGC CACAATTCTC 
TTCGATTTCT GGAAAACTGA CTCATGGCTT AGTTACATCC TCACTTTAAT 
CGCTTGCTTC GTCTTCTCCG CTTTCTATCA ATACCTCGAG AATCGCCGCA 
TCCAATTCAA ATCCCTTTCT TCCTCCCGTC GTGCTCCTCC ACCGCCTCGC 
TCTTCCTCCG GCGTCTCCGC GCCTCTTATC CCTAAATCCG GTACCAGATC 
CGCCGCTAAA GCTGCTTCGG TTCTTCTTTT CGGCGTCAAC GCAGCGATCG 
GTTACTTGCT GATGCTTGCA GCTATGTCTT TCAACGGAGG TGTTTTCATC 
GCGATTGTCG TCGGATTAAC CGCCGGATAC GCTGTTTTTA GATCTGATGA 
CGGCGGTGCT GATACCGCCA CGGATGATCC ATGTCCATGT GCTTGATAAT 
GATTGATAAT AAAATCAAAA TCGGAAAAAT CTCAAAAAAG GTGTGTTTGA 
TAATTGATGT TTGTATTGTT GTTTGTTTCT GTATGATTAG TTGCTTTGTA 
ACAAAATAAT CCAATCTAAA TGTGTTTCTT GAGT

Gene models with high sequence identity

  1. AT5G20650.1 [+] show detail - copper transporter 5
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther COPPER TRANSPORTER 1.5e-83
HMMPanther Ctr copper transporter 1.5e-83
HMMPfam Ctr copper transporter 4.9e-27

See the detailed result >

AT5G20650.1

Model type
Protein coding
Short Description
copper transporter 5
Curator Summary
encodes a member of copper transporter family and functionally complements a high affinity copper transporter mutant in yeast
Computational Description
copper transporter 5 (COPT5); FUNCTIONS IN: copper ion transmembrane transporter activity, high affinity copper ion transmembrane transporter activity; INVOLVED IN: copper ion transport; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ctr copper transporter (InterPro:IPR007274); BEST Arabidopsis thaliana protein match is: Ctr copper transporter family (TAIR:AT2G26975.1); Has 497 Blast hits to 497 proteins in 140 species: Archae - 0; Bacteria - 0; Metazoa - 217; Fungi - 69; Plants - 156; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL03-01-D08 introduced

  • F03827 - seed::increased size / seed::increased length
  • F04824 - Specific phenotypes were NOT observed.
  • F06924 - Specific phenotypes were NOT observed.
  • F11042 - fruit::abnormal
  • F12309 - seed::increased size / seed::increased length
  • F27316 - Specific phenotypes were NOT observed.
  • F28717 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

8 mutant lines found