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  3. RAFL03-01-D10

RAFL03-01-D10

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02271)

full reading [+] show sequence

Nucleotide sequence: RAFL03-01-D10 - full reading 
ACCTCATTCA TATCTCTCTC AACCTGAACA TTTTCATTTT TTCTAAATCA 
AGAACTTCAA ATCTTGAAAC TTTCTAAAAA GATGGAGCTT ATTCCTGATC 
TTCCCGAAAC TGTAGCCTAC GAGTGTCTCC TACGCTCCTC CTACAAGCAA 
TTCCCTCTTA TGGCCTCTGT TTGCAAACTC TGGCAGCGAG AAATCAGCCT 
CTCTGATTTT TTCCGACACC GGAAAGCTTC AGGACATAGT CAAGAGCTTG 
TTGTCTTGTC TCAAGCTCGG GTCGACCCGG TTAAAGAACT CGTATCGGGT 
AATAAAACCA TCCCCACCCC CGTGTACCGA ATCTCGGTTC TTGAACTTGG 
TACCGGTCTA AGGAGCGAGC TGCCTCCGGT TCCAGGTCAT TCCAACGGGT 
TGCCTCTGTT CTGCAGATTA GTCTCTGTCG GGTCGGATCT TGTTGTATTG 
TGCGGGCTTG ACCCGGTTAC ATGGCGTACC TCTGATTCGG TCTTCGTTTT 
CAGCTTCTTG ACCTCCACGT GGCGCGTCGG GAAGAGCATG CCAGGTGGAC 
CGCGTTCCTT CTTTGCCTGC GCTTCGGATT CTCAACGGAA CGTCTTTGTG 
GCTGGAGGAC ACGACGAAGA CAAGAACGCG ATGATGTCAG CTCTGGTGTA 
TGACGTGGCA GAAGACAGAT GGGCTTTCTT GCCGGATATG GGCCGTGAGC 
GAGACGAATG CACAGCTATT TTCCACGCTG GCAAATTCCA TGTCATCGGT 
GGTTACTCCA CGGAGGAACA AGGGCAATTT AGTAAAACTG CTGAATCGTT 
CGACGTCACC ACATGGCGGT GGAGTCCACA AGGAGAAGAG TTTCTCTCTT 
CGGAGATGAC TATGTGGCCT CCGATTTGTG CTGCCGGTGA AAACGGAGAT 
TTATATGCTT GTTGTCGCCG TGATCTGATG ATGATGAAAG ATGACACGTG 
GTATAAAGTT GGGAATCTAC CTGCTGACGT GTGCAATGTA TCTTACGTGG 
CGATAAGGAG GTCTGGAAAC CTGGTTGTGA TCGGTTCGGC TCGGTACGGC 
GAACCAAGTG TAGGGTATAA TTGGGATATG AGCAATTCTC GATGGTTAAA 
ACTGGAAACA CATGATAAAT ATGAAGGCCA CGTTCAAGCT GGTTGCTTCT 
TGGAGATATA AAAAAACTTT AGAAAAGGTT CCGAATCTTT TGTACGTCGT 
CCTTGCGAAA TGACGGTAAA TTTGGTCGGT TGATTTTGTC AAGTGTGACT 
GTATAAATAT TATATTGTTA TAGATAAATT TGTTAGCTTG AATGTAAAAA 
AATTATTGTC GAGCG

Gene models with high sequence identity

  1. AT1G15670.1 [+] show detail - Galactose oxidase/kelch repeat superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMSmart Kelch repeat type 1 0.63
HMMSmart Kelch repeat type 1 0.0078
HMMPanther KELCH-RELATED 2e-10
HMMPanther Kelch related 2e-10
Gene3D Kelch-type beta propeller 8.9e-32
superfamily Galactose oxidase/kelch, beta-propeller 1.2e-42

See the detailed result >

AT1G15670.1

Model type
Protein coding
Short Description
Galactose oxidase/kelch repeat superfamily protein
Computational Description
Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G80440.1); Has 1241 Blast hits to 1194 proteins in 125 species: Archae - 6; Bacteria - 99; Metazoa - 399; Fungi - 6; Plants - 685; Viruses - 3; Other Eukaryotes - 43 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL03-01-D10 introduced

  • F19119 - rosette leaf::dark green / rosette leaf::decreased size / rosette leaf::increased width / cauline leaf::decreased size / cauline leaf::present in fewer numbers in organism / stem::decreased thickness / whole plant::decreased height / whole plant flowering stage::premature / stem::abnormal

Mutant lines with disrupted or induced

3 mutant lines found