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  3. RAFL03-03-E01

RAFL03-03-E01

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00027)

full reading [+] show sequence

Nucleotide sequence: RAFL03-03-E01 - full reading 
AGAAACTAAG AGAGAATGGA ATTAACACTA AAATTGCTGG TTCTGCTTCT 
GTTTATCTTA AATCATCATG TTGGTTCTGG CTCTATCGTC AAGTTTCTTC 
CCGGTTTTGA AGGCCCTCTT CCTTTCGAAC TTGAAACCGG GTACATTGGT 
ATTGGTGAGG AAGAGGAAGT GCAATTGTTC TATTATTTCA TCAAATCTGA 
GAGAAATCCA AAAGAAGACC CTCTTCTTCT CTGGTTAAGT GGAGGACCTG 
GATGTTCTTC TATCACTGGC CTTCTTTTCC AGAATGGACC TTTGGCTTTG 
AAGTCCGAGG TTTACAATGG AAGTGTTCCT TCTTTGGTCT CTACTACATA 
TTCGTGGACT AAGACGGCGA ACATAATATT CTTGGATCAA CCTGTTGGAG 
CTGGCTTCTC CTACTCAAGA GCTCCACTTA TTGATACACC TACTGACACA 
GGAGAAGTTA AGAGGATTCA TGAGTTTCTC CAAAAGTGGC TAAGCAAGCA 
TCCACAGTTT TCTTCCAACC ATTTTTATGC TGGCGGAGAT TCTTATTCCG 
GTATGATTGT TCCGGCCCTC GTTCAAGAAA TCTCGAAAGG AAATTATATA 
TGTTGCAACC CTCCTATAAA TCTAAAGGGT TATGTACTCG GGAACCCGAT 
AACGCACGAA GACGACCCAA ACTATCGCAT TCCATTTTCT CATGGAATGG 
CACTAATTTC AGATGAACTA TACGAGTCAA TTAGGGAAGC CTGCAAAGGA 
AATTATTTCA ATGTGGATCC ACGAAACACA AAATGTTTGA AACTTGTCGA 
GGAATTTCAT AAGTGTACCG ACAAACTAAA TGAATTCCAT ATACTATCAC 
CAGATTGCGA CACGGCATCT CCTGATTGCT ATTTATATCC ATTTTATCTC 
ATTAGCTTTT GGGCCAATGA CGAGAGCGTC CGCGATGCTC TTCATGTTAA 
TAAGAGGAGT ATTGGAAAAT GGGAGCGATG TAACTATCTG AGTAAACCAT 
ACAACAAAGA CATCAAGAGC AGCGTACCAT ACCATATGAA TAACAGTGTT 
AGTGGCTACC GATCTCTCAT CTACAGTGGT GATCATGATT TGGTGGTTCC 
TTTCCTTGCA ACACAAGCCT GGATAAAATC TCTAAATTAC TCTATCATTG 
ATGAATGGAG ACCTTGGATG ATTAGAGATC AAATCACTGG ATACACGAGA 
ACTTATTCCA ATAAGATGAC ATTTGCTACT GTCAAAGGAA GTGGGCACAC 
AGCGGAGAAT AAACCACAAG AGAGTTTTAT CATGTTTCGA AGGTGGATTA 
ATGGCCAACC TTTGTAAAAA TTACAATTAT GAATTATCTA CTATGTGAGC 
TATTTGTTCC TGAGGAGGTT TAGAACTCTA CCACTAGTTC GACATGCTAT 
AGTTACCAAT AAATGAGGTC TTATTTGGGT CTAGGGAGAC TACAGGCCAA 
AGACTTGGAA CTTCTTGGTT TATTGTTATA TGTTGTTAGG TAACATTTTT 
GTGTTATTCA TAGATTTTAC CTTTTGGTAC TTTTATCTTC TCACAGATTA 
TATTGTTCTG TGTTGTGCTG TTATTTTTTA CAATTAAACT TAGATTTTTA 
ATAAATTCTT TTTTGTCCC

Gene models with high sequence identity

  1. AT2G22970.1 [+] show detail - serine carboxypeptidase-like 11
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther SERINE CARBOXYPEPTIDASE I (PLANTS) 2.7e-300
HMMPanther Peptidase S10, serine carboxypeptidase 2.7e-300
HMMPfam Peptidase S10, serine carboxypeptidase 9.2e-129
Gene3D no description 1.9e-117
FPrintScan Peptidase S10, serine carboxypeptidase 3.4e-22
FPrintScan Peptidase S10, serine carboxypeptidase 3.4e-22
FPrintScan Peptidase S10, serine carboxypeptidase 3.4e-22
FPrintScan Peptidase S10, serine carboxypeptidase 3.4e-22
superfamily alpha/beta-Hydrolases 1.3e-124

See the detailed result >

AT2G22970.1

Model type
Protein coding
Short Description
serine carboxypeptidase-like 11
Computational Description
serine carboxypeptidase-like 11 (SCPL11); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 12 (TAIR:AT2G22920.2); Has 3892 Blast hits to 3798 proteins in 426 species: Archae - 0; Bacteria - 404; Metazoa - 645; Fungi - 842; Plants - 1574; Viruses - 0; Other Eukaryotes - 427 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL03-03-E01 introduced

  • F10618 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

3 mutant lines found