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  3. RAFL03-04-H03

RAFL03-04-H03

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00119)

full reading [+] show sequence

Nucleotide sequence: RAFL03-04-H03 - full reading 
TCTCTTTCTC TCTGACTCTG AAAAAGATGA AGTGGAGAAG TTAATGTTCA 
CCAACTTAAT ACTGCAAAGT CGAAATCTTT CTTTCTTCTT CTTTGCCTTC 
TTTCAAGTGC TTTCCCTCTC TCATTCTCCT TCTTCCTCCT CTGTTTCTTT 
GTTGTTCTAA ACTTAAAAAA AGATTGAAGT TGCAAGTAAC AGAGGAGCTG 
TCTCAGATCT GGTTCTAAAG CGAGAGAAAG AGATTTTGAG TTGAGGAAAA 
ATGAGTAAAG AAGAGTTCAT GAAGATCCAG ACTTGTGTTC TTAAAGTGAA 
CATACACTGT GATGGCTGTA AGCAGAAAGT CAAGAAAATC TTGCAGAAAA 
TCGAAGGTGT TTTCACGACC AAGATTGACT CAGAGCAAGG GAAAGTGACT 
GTCTCTGGGA GCGTAGATCC TTCAGTTCTC ATCAAGAAGC TCGCCAAATC 
TGGTAAACAT GCTGAAATCT GGGGAGCTCC AAAGGGTAAC AACAATCCCA 
ATCAGTCCCA AATGGCCAAT CAGTTTAAGG GAATGCAGAT TGACCATGGA 
AAAGCCGGAG GCGGTGGTGG CGGAAACAAT AATAACAACA AGAAAGGCCA 
GAAAAACGGC GGAGGAGGTG GCGGCGGTGG AGGTGGAGGT AACAGTAATG 
CGCCAAAGAT GGGCCAGCAA CTGAATCCAC AACATTTGCA GCAGCTTCAA 
CAGCTTCAGA AGATGAAAGG GTTTCAAGAT CTGAAGCTTC CTCCTCAGTT 
AAAAGGCTCT GTTCCTGTCA ACAAGAACCA AAACCAGAAA GGAGTCAAGT 
TTGATGTCCC TGAAGATGAT GATGATGATG ATTTCAGTGA CGAATTCGAT 
GATGAATTTA CTGATGATGA TGACGACGAG TTTGATGATG AGTTTGACGA 
TCTCCCTCTT CCGTCTAATA AGATGAAGCC CAACATGACG ATGATGCCTA 
ATGCTCAACA GATGATGATG AACGCTCAGA AGAATGCCAA TCTTGCCGGT 
GGTCCTGCTA AAAACGGCGG TAAAGGCGCT CCCGCTGCTG GCGGCGGCGG 
TGCCGGTGGT GGAAAGGGTG CTGGCGGCGG TGCTAAGGGT GGTCCTGGGA 
ATCAAAACCA AGGTGGAGGC AAGAACGGCG GTGGTGGACA TCCACAAGAT 
GGTAAAAACG GCGGTGGAGG CGGTGGTCCC AACGCCGGAA AAAAGGGTAA 
CGGCGGAGGT GGGCCCATGG CTGGAGGAGT TTCGGGAGGT TTCCGACCCA 
TGGGAGGTGG AGGACCACAG AATATGAGCA TGCCAATGGG TGGTCAAATG 
GGTATGGGTG GTCCGATGGG GAATATGCCG GCGGTTCAGG GGTTACCAGC 
GACCGGTCCA GGCGGTGCAC CACAGGGTTA TTTCCAAGGG GCCGGGATAG 
ATCCTATGCA AATGCAGCAA CAGCAACAAC AACAGCAATA TTTAGCGGCG 
GTTATGAACC AGCAACGAGC TATGGGGAAC GAACGGTTCC AACCAATGAT 
GTACGCAAGG CCACCACCGG CAGTTAACTA TATGCCGCCA AACCCGCACC 
AATATCCGAA TCCGCATCCG TATCCGTATC CGTACCCGTA TCCATATCCT 
CCACCTTATG GGAATGATCA ATACTCTCAT GCCTTTAGCG ACGAGAACAC 
ATCAAGCTGC GATATTATGT GAGATGGTTA AAAATCAAAA TAAAACTTTT 
ATAGTTTGTG TGTATTTGAA TCCTAAGTTG GGGTTTTTTT CGATGGATCG 
AAATGCTAAG TTGTTGTAGG TTTTTTTTTT TCACTTTGTG ATAGCTTCGG 
TAATTTAATA GAATAATATA AAATTTG

Gene models with high sequence identity

  1. AT3G06130.1 [+] show detail - Heavy metal transport/detoxification superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther CHLOROPLAST-TARGETED COPPER CHAPERONE 3.1e-37
HMMPanther COPPER TRANSPORT PROTEIN ATOX1-RELATED 3.1e-37
superfamily Heavy metal transport/detoxification protein 3.8e-18
ProfileScan Heavy metal transport/detoxification protein 11.429
Gene3D no description 1e-12
HMMPfam Heavy metal transport/detoxification protein 1.1e-12

See the detailed result >

AT3G06130.1

Model type
Protein coding
Short Description
Heavy metal transport/detoxification superfamily protein
Computational Description
Heavy metal transport/detoxification superfamily protein ; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT5G19090.1); Has 122077 Blast hits to 41053 proteins in 2213 species: Archae - 188; Bacteria - 33817; Metazoa - 49902; Fungi - 6812; Plants - 10774; Viruses - 1540; Other Eukaryotes - 19044 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL03-04-H03 introduced

  • F25403 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

8 mutant lines found