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  3. RAFL03-04-L10

RAFL03-04-L10

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00140)

full reading [+] show sequence

Nucleotide sequence: RAFL03-04-L10 - full reading 
AGCTCTTCCT AGTGTTAAAC CAGAGTAAAG CTTGAAACTT TGGACTAAAA 
GAATGGCGTC TTTGGGTGTG TCGGAAATGC TTGGTACTCC CCTTAACTTC 
AGGGCAGTTT CAAGATCGTC TGCTCCGTTG GCATCAAGCC CATCCACGTT 
CAAGACTGTT GCTCTCTTCT CTAAGAAAAA GCCAGCTCCT GCTAAGTCCA 
AGGCTGTCTC TGAGACTAGC GATGAGCTCG CCAAGTGGTA TGGTCCTGAC 
AGGAGAATTT TCTTGCCTGA TGGTCTTTTG GATAGATCAG AGATCCCAGA 
GTACTTAAAC GGTGAAGTTG CTGGAGATTA TGGTTATGAC CCATTTGGTC 
TTGGAAAGAA GCCTGAGAAC TTTGCTAAAT ACCAAGCTTT TGAATTGATC 
CATGCGAGAT GGGCTATGTT AGGAGCAGCT GGTTTCATCA TTCCTGAAGC 
TTTAAACAAA TATGGCGCTA ACTGTGGCCC TGAAGCTGTC TGGTTTAAGA 
CTGGTGCTTT GCTTCTTGAT GGAAACACAT TGAACTACTT TGGCAAGAAC 
ATCCCTATCA ACCTTGTTCT CGCCGTAGTT GCTGAGGTTG TTCTCCTCGG 
TGGAGCCGAG TACTACAGAA TCACCAACGG ATTGGATTTC GAGGACAAGC 
TACACCCAGG AGGTCCATTT GATCCTCTAG GCCTTGCTAA GGACCCTGAG 
CAAGGAGCTC TTCTCAAAGT CAAAGAGATC AAGAACGGGA GATTAGCCAT 
GTTTGCGATG CTCGGTTTCT TTATCCAAGC GTATGTTACC GGAGAAGGTC 
CTGTTGAGAA CCTTGCAAAG CATCTCAGTG ATCCTTTTGG AAACAACTTG 
CTTACCGTCA TCGCTGGAAC TGCCGAGAGA GCTCCCACTC TCTAAGCCAT 
TTCTACTTTT TTTAAGAGCT TCCAAAATGT ACACTTTGTT CGATTGGAAC 
TCCTTTTGAC AATGTTAAAA AAACTTCCAT CT

Gene models with high sequence identity

  1. AT4G10340.1 [+] show detail - light harvesting complex of photosystem II 5
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Chloroa_b-bind 5.6e-46
HMMPanther Chlorophyll A-B binding protein 1.1e-112
superfamily Chlorophyll a-b binding protein 7e-61

See the detailed result >

AT4G10340.1

Model type
Protein coding
Short Description
light harvesting complex of photosystem II 5
Curator Summary
photosystem II encoding the light-harvesting chlorophyll a/b binding protein CP26 of the antenna system of the photosynthetic apparatus
Computational Description
light harvesting complex of photosystem II 5 (LHCB5); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response to blue light, response to red light, response to far red light, photosynthesis, nonphotochemical quenching; LOCATED IN: in 9 components; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: chlorophyll A/B binding protein 1 (TAIR:AT1G29930.1); Has 2360 Blast hits to 2295 proteins in 226 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 2013; Viruses - 0; Other Eukaryotes - 343 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL03-04-L10 introduced

  • F00433 - Specific phenotypes were NOT observed.
  • F00532 - seed::increased size / seed::increased length
  • F03116 - Specific phenotypes were NOT observed.
  • F04617 - Specific phenotypes were NOT observed.
  • F05944 - Specific phenotypes were NOT observed.
  • F11330 - Specific phenotypes were NOT observed.
  • F12430 - rosette leaf::decreased size / rosette leaf::present in greater numbers in organism / cauline leaf::decreased size / stem::abnormal / sporophyte vegetative stage::decreased speed
  • F13031 - Specific phenotypes were NOT observed.
  • F20512 - Specific phenotypes were NOT observed.
  • F22820 - Specific phenotypes were NOT observed.
  • F22831 - Specific phenotypes were NOT observed.
  • F24613 - seed::increased size / seed::increased length
  • F25420 - Specific phenotypes were NOT observed.
  • F25503 - rosette leaf::increased size / stem::increased thickness / whole plant::increased height / fruit::increased length
  • F27031 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

19 mutant lines found