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Full-length cDNAs
RAFL03-05-A01

RAFL03-05-A01

RIKEN Arabidopsis Full-length cDNAs

ACATACGCGG AAAAAAAAAA AAAAAGCGAA TCGTTTACTT ACCCCTCTTT 
GAAACCGACG GTGGTATTTT TCGCCGGAGA AGATGAAGCA GAGAACCTGG 
CCTTGTAGAT CTGAAGGATC TCGATTCTCC TCCTTATCGT TTTTGAAACC 
TCACGACAAG GATAAACGGA GTAGAATTTC ATCAATCAAC AAAGCAACGG 
CGAAGTCAAC CACAAGTTCA AGGTCTTCTT CTTCCTCTTC TTCTTCACGT 
CCTCCATCGA ATGAGTTCGG AGATTTCTCG ATGCTTCCGT ATGATATACT 
GATGAAGATT GCTGCACCGT TTAGTCATCC GAATCTTCAA GCGGCGTCTT 
TGGTATGTAA ATCGTGGAGA GACGCGCTAA AGCCGTTGCG AGAGTCGATG 
TTGTTGATTC GGTGGGGGAA AAAGTACAAG CACGGAAGAG GAGGTGTGCG 
AGCGAATCTC GACAAAGCTC TTGATTCGTT TCTGAAAGGA GCTATGCGTG 
GATCCACGCT CGCTATGGTC GACGCTGGGC TTGTGTATTG GGAAAGAGGA 
GAGAAGGAGA AAGCGGTGAA TTTGTATCGG AGAGCTTCGG AGCTTGGTGA 
TGCTGTTGGT CAATGTAATT TAGGGATTGC TTATCTTCAA GTTCAACCTT 
CAAATCCCAA GGAAGCGATG AAATGGTTGA AACAATCTGC AGAGAATGGT 
TATGTTCGAG CACAGTATCA GTTAGCTCTT TGTTTACACC ATGGTCGGGT 
CGTGCAAACC AATCTGCTTG AAGCTACTAA ATGGTACCTA AAGGCAGCAG 
AAGGTGGGTA TGTACGAGCG ATGTATAACA TTTCGCTTTG TTATTCGGTT 
GGAGAAGGCT TACCACAAAA CCGCAAGCTA GCAAGAAAAT GGATGAAACG 
AGCAGCTGAT CACGGCCACA GTAAAGCTCA GTTTGAACAC GGCCTTGCTC 
TATTTTCTGA AGGGGAGATG CTGAAGTCAG TGCTTTACTT AGAACTTGCC 
GAACGTGGTG GCGAAGCAGC TGCTACTCCC GTCAAAGAAG TTGTACACCA 
ACAGCTTTCT GCAACTTTTG GTGGTCAGGC CGTACACCAT GCCATACACC 
AAGCCAATAA CTGGCGTCCT CTACCAGTTA CTCGATGACT CCTATCATTT 
ATTTCAGTGA GGTCTAGTGA TTGGCTAGTT ACATGTCCAT AACTTAAATT 
CCAATTTGAC AATGTATCAA TGACAAAACC TTATTTCAGA TTTCTACTTT 
TAGTTCGTAC T

Gene models with high sequence identity

AT1G70590.1 [+] show detail - F-box family protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	SEL-1-LIKE PROTEIN-RELATED	2.4e-274
HMMPanther	SEL-1-LIKE PROTEIN	2.4e-274
Gene3D	Tetratricopeptide-like helical	7.2e-42
HMMSmart	Sel1-like	0.21
HMMSmart	Sel1-like	6.9
HMMSmart	Sel1-like	1.2e-05
HMMSmart	Sel1-like	8.4e-07
HMMSmart	Sel1-like	1.7e-08
ProfileScan	Tetratricopeptide repeat-containing	8.654
HMMPfam	Sel1-like	2
HMMPfam	Sel1-like	0.094
HMMPfam	Sel1-like	0.00048
HMMPfam	Sel1-like	5e-08
HMMPfam	Sel1-like	5.3e-09
HMMPfam	F-box domain, cyclin-like	8e-06
superfamily	HCP-like	6e-35
superfamily	F-box domain, Skp2-like	2.3e-06

See the detailed result >

AT1G70590.1

Model type: Protein coding
Short Description: F-box family protein
Computational Description: F-box family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Sel1-like (InterPro:IPR006597); BEST Arabidopsis thaliana protein match is: HCP-like superfamily protein (TAIR:AT1G18260.1); Has 16059 Blast hits to 6577 proteins in 1289 species: Archae - 0; Bacteria - 11525; Metazoa - 502; Fungi - 723; Plants - 391; Viruses - 15; Other Eukaryotes - 2903 (source: NCBI BLink).
Link: InterPro Scan - TAIR

Mutant lines with RAFL03-05-A01 introduced

F16049 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

2 mutant lines found