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  3. RAFL03-05-L05

RAFL03-05-L05

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00205)

full reading [+] show sequence

Nucleotide sequence: RAFL03-05-L05 - full reading 
CCCTCCAAAT ATATTTTCTC CACACTATCT TTGTCGTCTT CTTCCCCAAA 
TGTTCTTCAT CGCTCACCAC ATAAACCCTA GCGATCGATT TCTCCAGAAA 
TCAACCAACA ATCGTTCATG GCGTCTTCTT CCACCTTTCT GGAATTAACT 
CCATTTCAAT GGAATCAACC TCTCCCATAC ACACAACGAC CCCATCATCG 
TACTGTTCTT CTCTACTCCA AACCTCAAAG GAGATCAAAT TCGATTCGTC 
TCCAAATCTC CGTCAAATAC AAGCAATCAA CATCTTCTTC AGATCCAGAT 
TTGAGATCCA ATTTCAATCC ATTTGAACAA ATCGCGATTC AGGTCAAAAA 
AGCGTTAGAT TCGTTGAAGA AACCTGCTAT AGCTGCGGTT TTACTTGGTT 
TGCTTTTGTT CTATGATCCT AATTCGGCTT TAGCTGCGTC TGGTGGTAGA 
ATTGGTGGTA ATTCCTTCTC GTCGAGGTCT CGGAGCTCTT CTTCTTCTTC 
TTCGCAATCG TATTCTGTGC CGAGAACATC GAATCCGAGC TTTTCGTACT 
CTGCTAGGAC CGCTCCGTAC TATGGACCGT CACCTTTCGG TGGGGGTTTT 
GTGGGCCCGG CGGTTGGTTT TGGGTTTGGT GGTTTTTCGA GCTTCTCCTT 
GATTTTGGTT GGTTTCGCTG CGTTTGTTTT GGTCTCTGGA TTCCTCTCAG 
ATCGGTCACA GGATGATAGC ATTTTAATAG ATACTCAGAA AACTAGCGTC 
ATTAAGCTAC AGGTGGGGTT GCTTGGTTTG GGGAGGACAC TACAACAAGA 
TTTTAATCGT CTTGCTGAAA GTTCGGATAC ATCCACACCG GAGGGTCTGA 
GCTATGTTTT AACCGAGGCA ACATTAGCTT TGCTGAGACA CCCTGATTAC 
TGCATCTCTT GTTATTCATC AGTGGATGTG AAGCCGAGTA TAGAAAAGGG 
AGAGAAGCGA TTTAATCAAC TCTCCATTGA AGAACGAGGA AAATTTGATG 
AGGAGACACT TGTTAACGTG AATAGCATAA AGAGACAAAG CTCGAAGATT 
CGGAAAGCTA GCGGTTTCAG CAATGAATAT ATTGTGGTAA CCATCTTGAT 
GGCTGCAGAG GGTATACATA AACTGCCACC AATAAACGGA ACTACAGATC 
TGAAGGAAGC CTTACTGAAA CTCGGGTCAA TACCAAGAAA CAAAATAATG 
GCAGTAGAAG TACTATGGAC ACCGCAGAAC GAAGCCGACG CATTGTCAGA 
AAGGGAACTA CTTGAAGATT ACCCACTTTT GAGGCCTTTG TAAATCATTG 
TGATAATACC AAATAGAACC AATCTCTTGT TAGACGGTAC AGTTTCTTAC 
TCTGTAAAGT GTAAAACACA CCATAACTTT GTTTTTATAC CACAAACCTC 
TATGACCGGT TACCTAAACC GGAAATGAAG GCAATTAAGA ATCAAATTTG 
ATACC

Gene models with high sequence identity

  1. AT1G54520.1 [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...
    E-value: 0; Score: 99.93

 

InterPro Scan Digest

Program Description E-value
Coil coiled-coil 0
HMMPIR Protein of unknown function DUF1517 2.4e-204
HMMPfam DUF1517 1.1e-101

See the detailed result >

AT1G54520.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1517 (InterPro:IPR010903); Has 276 Blast hits to 275 proteins in 83 species: Archae - 0; Bacteria - 108; Metazoa - 6; Fungi - 0; Plants - 113; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL03-05-L05 introduced

  • F06002 - fruit::increased length / fruit::increased thickness
  • F09229 - Specific phenotypes were NOT observed.
  • F21326 - Specific phenotypes were NOT observed.
  • F28729 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found