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RAFL03-06-B01

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda13442)

full reading [+] show sequence

Nucleotide sequence: RAFL03-06-B01 - full reading 
TAGATATCAG GATTCAAGAA AACGCAATGG CTGGGATCTT GAATCTTTCC 
AAGCACGTTA CCGGAAAATC TAAGATTGCG GGAGAAGGGT TAAAGATACT 
TGTAGAGATT CTCAACGAAG GAGCTAAAAC AGAGACGAGA CTATACTCTG 
CTTCTGCTCT GTTTTATCTC TCTTCCGTTG AAGATTACAG CAGATTGATC 
GGAGAAAATC CAGATGCGAT TCCGGGATTG ATGAATATCG TTAAAGGAGA 
TGATTACGGC GATTCCGCCA AACGTAGCGC GTTGCTTGCG GTTATGGGTT 
TGTTAATGCA ATCCGATAAC CATTGGCGTG TTCTCGCCGC CGGAGCTGTT 
CCGATTCTTC TTGATCTGTT GAGATCGGGG GAGATTAGCG GCGGACTCAC 
GGCGGATTGT TTAGCGACGT TGGCGAAGCT GGCGGAGTAT CCTGATGGGA 
CGATTGGGGT GATTCGTCGT GGCGGTTTGA AACTCGCGGT GAAGATTTTG 
TCTTCGTCGG AGGATTCTCC GGTGGCGGTG AAGCAGCATT GTGTTGGTCT 
GATTTTGAAC TTGTGTCTTA ACGGAGGACG TGACGTCGTT GGGGTTCTGG 
TGAAGAATTC GTTGGTCGTG GGGTCGCTTT ACACGGTGTT AAGTAACGGC 
GAATATGGAG GAAGCAAGAA GGCTAGTGCG CTGATCAGAA TGATCCATGA 
GTTCCAGGAG AGGAAAACCG GTTCGGTTGA ACCGAATCAT CAAAGAGGAC 
GGTTCGTTCA CGCCTGGTGA TTTTGGTACA CAGTAACTCT TGAGTATTTT 
AAAGAGTTAT TTACCATAAA GAAAACTAAA TAATTTTGGT TAAGGGTGAA 
ATTCTTTTAT TAATTTTTAT GTAAAGGGTT TAGTGTTTGT ATATTTAGCT 
CGGGTTTTAT TTTCATAAAC CAAAGAGCTA CTGGGATGGC AATAAGCTTC 
AGTTTTTTTA AGAAGCTGTG TCCATATTCC ATAATGTAAT TATAACTGAA 
TCAATAAAAA CTATTACAAT T

Gene models with high sequence identity

  1. AT1G10560.1 [+] show detail - plant U-box 18
    E-value: 0; Score: 99.80

 

InterPro Scan Digest

Program Description E-value
Gene3D Armadillo-like helical 0.000000000000015
ProfileScan Armadillo 8.837
superfamily Armadillo-type fold 1.2e-23
HMMSmart Armadillo 94
HMMSmart Armadillo 29
HMMSmart Armadillo 12

See the detailed result >

AT1G10560.1

Model type
Protein coding
Short Description
plant U-box 18
Curator Summary
Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays.
Computational Description
plant U-box 18 (PUB18); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, LP.10 ten leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G60190.1); Has 3089 Blast hits to 2773 proteins in 228 species: Archae - 0; Bacteria - 22; Metazoa - 252; Fungi - 338; Plants - 2172; Viruses - 3; Other Eukaryotes - 302 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL03-06-B01 introduced

  • F00322 - Specific phenotypes were NOT observed.
  • F01912 - Specific phenotypes were NOT observed.
  • F11116 - Specific phenotypes were NOT observed.
  • F15426 - seed::increased size
  • F16917 - Specific phenotypes were NOT observed.
  • F25205 - rosette leaf::increased length / rosette leaf::present in fewer numbers in organism / stem::present in fewer numbers in organism

Mutant lines with disrupted or induced

10 mutant lines found