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  3. RAFL03-06-H07

RAFL03-06-H07

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00196)

full reading [+] show sequence

Nucleotide sequence: RAFL03-06-H07 - full reading 
AGGTCGAGAA ATCTCCCTCT AGGGTTTCTT TGATCAAACC AGAGAGCCGT 
CAGGGAGAGC AAAACAAAGA TCGGAGAAGA TGAAGACGAT TCTTTCTTCC 
GAAACGATGG ACATCCCCGA CAGTGTTACC ATCAAGGTTC ACGCTAAAGT 
GATCGAAGTC GAAGGACCTC GCGGGAAGCT TGTTCGCGAT TTCAAGCATC 
TCAACCTCGA TTTCCAGCTG ATCAAGGATC CAGAGACTGG AAAGAAGAAG 
CTTAAGATCG ATTCGTGGTT TGGAACACGC AAAACCAGCG CCTCCATCAG 
AACCGCTCTT AGCCACGTCG ATAACTTGAT CTCCGGTGTT ACCAGAGGTT 
TCCGTTACAA GATGAGGTTC GTGTACGCCC ATTTTCCCAT CAACGCCTCC 
ATCGGCGGTG ACGGAAAGTC TATCGAGATC CGTAACTTCC TTGGCGAGAA 
GAAGGTGAGG AAGGTAGAGA TGTTGGATGG TGTAACCATT GTTCGATCTG 
AGAAGGTGAA GGATGAGATT GTTCTTGACG GTAACGACAT CGAGCTTGTT 
TCAAGGTCAT GCGCTTTGAT CAACCAGAAA TGTCACGTGA AGAAGAAGGA 
TATCAGGAAG TTTCTTGATG GTATCTATGT TAGCGAGAAA AGCAAGATCG 
TAGAGGAAGA ATGAATGCCC ATATCATCGT CTTAGCTCCT ATTTCTTGTC 
TTTTGAATGT TAGTTTCGTT TTATGGACCA AATCCACCGG TGTTGCAAAA 
CTCTGGCTAT CCCTTGTTCC CTTTTTGTGT TCGAGATTTT ATTTACTTAT 
GCACAAGTTT TGGAGACGAG CTATCATTTT CACCTTTGCT TAATTAAATC 
ATATCGTGTG AATTTGGGAT TGTTCTGGAT TTGGCATTGT GGGTTGTGCA 
TTCAAAATTG ATACTTCAGT CACTAAACT

Gene models with high sequence identity

  1. AT1G33140.1 [+] show detail - Ribosomal protein L6 family
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily Ribosomal protein L6, alpha-beta domain 3.4e-30
superfamily Ribosomal protein L6, alpha-beta domain 0.0000000000000085
HMMPfam Ribosomal protein L6, alpha-beta domain 0.00000065
HMMPfam Ribosomal protein L6, alpha-beta domain 0.000000000000021
Gene3D Ribosomal protein L6, alpha-beta domain 0.000000000000023
Gene3D Ribosomal protein L6, alpha-beta domain 2.8e-36
PatternScan Ribosomal protein L6, conserved site-2 0
HMMPanther 60S RIBOSOMAL PROTEIN L9 2.8e-132
HMMPanther Ribosomal protein L6 2.8e-132

See the detailed result >

AT1G33140.1

Model type
Protein coding
Short Description
Ribosomal protein L6 family
Curator Summary
Encodes ribosomal protein L9. Identified in a screen for enhancers of as1. as1/pgy double mutants show defects in leaf vascular patterning and adaxial cell fate. Double mutant analysis indicates pgy genes function in the same pathway as REV, KAN1 and KAN2.
Computational Description
PIGGYBACK2 (PGY2); FUNCTIONS IN: structural constituent of ribosome, rRNA binding; INVOLVED IN: adaxial/abaxial pattern formation, translation; LOCATED IN: cytosolic large ribosomal subunit, vacuole, large ribosomal subunit, membrane, chloroplast envelope; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein L6 (InterPro:IPR000702), Ribosomal protein L6, alpha-beta domain (InterPro:IPR020040), Ribosomal protein L6, conserved site-2 (InterPro:IPR002359); BEST Arabidopsis thaliana protein match is: Ribosomal protein L6 family (TAIR:AT1G33120.1); Has 1644 Blast hits to 1643 proteins in 495 species: Archae - 312; Bacteria - 169; Metazoa - 422; Fungi - 179; Plants - 339; Viruses - 0; Other Eukaryotes - 223 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL03-06-H07 introduced

  • F05424 - Specific phenotypes were NOT observed.
  • F07122 - rosette leaf::dark green / rosette leaf::decreased size / sporophyte vegetative stage::decreased speed
  • F08911 - Specific phenotypes were NOT observed.
  • F08940 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

15 mutant lines found