1. Home
  2. Full-length cDNAs
  3. RAFL03-06-J14

RAFL03-06-J14

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00264)

full reading [+] show sequence

Nucleotide sequence: RAFL03-06-J14 - full reading 
ACTTATGCTC TTCATATCAC ATACAACAAA CTCATATATA TAAAAACTTT 
AACCTTCGTA TAGCAACGAT CTAGTAGAAA GCTTATACTA AAACTTTCTG 
ATTCTCTTAA TATGGCGGAG GAGTTTAAAG CTACGGCATC GATTTGTGGT 
GGCGGAGGTG GCGCGTGGTG GAACTCGCCA AGGAGCGTTA TGTCTCCTTC 
GGATCATTTC TTGTCACCAT GCTTCGGAGC GGCTATCACT TCCAATGATT 
TTAGCTCGCA AGAGAATCAT CTCAAATCTA GGATGACTTG TACGGACAAC 
AACAACATCG TTTTCGGGCA GCGAGAGGCG GATTCTGACA GTGGAGGAAG 
TACCGTGACG ATGGACTCGA CGTTGCAGAT GATGGGTCTA GGGTTTTCCT 
CAAATTGTTC TTCAGATTGG AACCAAACCA TTTTACAAGA AGACTTAAAC 
TCAAGCTTCA TAAGGAGCTC ACAAGATCAA GATCATGGCC AAGGATTCTT 
ATCCACAACT ACTTCACCTT ATATACTTAA TCCAGCTTGT TCTTCATCTC 
CATCAACTTC TTCGTCCTCA AGCTTGATAC GAACCTTTTA CGATCCCGAA 
CCAAGTCCAT ACAACTTTGT CTCCACCACA AGTGGTTCAA TCAACGATCC 
TCAACTTTCT TGGGCTAATA AGACAAATCC TCATCATCAA GTAGCTTATG 
GACTAATTAA CAGCTTCTCT AACAACGCAA ACTCTCGACC CTTTTGGAAT 
TCTTCATCAA CCACTAACTT AAACAACACG ACGCCGAGCA ATTTTGTAAC 
CACTCCGCAG ATAATATCTA CTCGTTTGGA GGACAAAACC AAGAATCTGA 
AGACAAGAGC TCAGAGTGAG TCTTTGAAGA GAGCAAAGGA TAATGAATCT 
GCGGCGAAGA AACCGAGAGT CACCACGCCT TCACCGTTGC CAACTTTCAA 
GGTGAGAAAA GAGAATCTAA GGGACCAGAT AACTTCATTA CAACAACTAG 
TTTCACCTTT CGGAAAGACA GATACTGCAT CTGTTCTCCA AGAAGCTATA 
GAGTACATCA AGTTCCTTCA CGACCAAGTC ACTGTTCTAA GCACTCCATA 
CATGAAACAA GGTGCCTCGA ACCAACAACA ACAGCAGATA TCTGGTAAAT 
CGAAGAGTCA AGATGAAAAT GAGAATCACG AACTAAGAGG ACATGGTCTA 
TGTCTCGTCC CAATATCAAG CACGTTTCCG GTGGCTAACG AAACAACAGC 
CGATTTTTGG ACACCAACGT TTGGGGGCAA CAATTTCAGG TGATTAAAGA 
GAGAGGGTTG TGGTTGTCAA GACGGATGGG AACATATGCT AAATTCAGCT 
TGGAGACTCT AAAGCATAAC AATAATTTTT AATGTATTTT CTTCTTCTTT 
CAATATTTTA AGGGGGGTTT ATTGCTGAAT TTAGCATATA TGGGTTGTTT 
TTATGTTGAA TAACCTTTTG TTCCTGTCAT TGTTCTTGAA TATATATATA 
TACATATTTT TGTCGTTGGT

Gene models with high sequence identity

  1. AT1G61660.1 [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMSmart Helix-loop-helix DNA-binding domain 0.0071
ProfileScan Helix-loop-helix DNA-binding domain 8.171
superfamily Helix-loop-helix DNA-binding 2e-11

See the detailed result >

AT1G61660.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT3G20640.1); Has 1502 Blast hits to 1260 proteins in 110 species: Archae - 0; Bacteria - 97; Metazoa - 123; Fungi - 48; Plants - 982; Viruses - 0; Other Eukaryotes - 252 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL03-06-J14 introduced

  • F25143 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

10 mutant lines found