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  3. RAFL03-08-H14

RAFL03-08-H14

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00018)

full reading [+] show sequence

Nucleotide sequence: RAFL03-08-H14 - full reading 
ATTTACAACT GTGGATAAGC CTTTTAGTCT GACTCAGCTT TCTCAAGATC 
CGAAAACACA CTGACCCAAC CCGGTTCGAT TTTGCTTAAC CGGACAAGAT 
ACATTAATCT GCCTAATCTT CAATTATTTA AAAGCTAACT AAACGTTATA 
CGTACTAATC ACTTCTTCCC CTATAAATAA ACCTTTCTAA TTTCTCATCT 
CAAATCACAC TGCATCACAA AACCCAAATC GGAACTTAAA CCAAAAGACA 
AACAAAAACG CCGTCGTTTC ACGATGCTTT CTTCTTCCCC AACCTTCTTC 
GCTACTCCAT TTCTCTCTTC TTCTTCTTCT TCTTCTCCGT CGTTCTCTTC 
TACTTCACCA CCGTCACGCA TTTCCCGGAT CTCGCCGTCG CTTTCTACAA 
CCACCGCGTC CTACACCTGC GCCGAAGATC TACCGAGATT ACGCCAAATC 
CCGCAGCGAT TTTCAGCAAC CGCGTCTCTC TACGAGATCC TTGAAATTCC 
CGTCGGCTCG ACGAGTCAAG AGATCAAATC AGCTTACCGG CGACTAGCCA 
GGATCTGTCA TCCCGATGTA GCGAGAAATA GTCGGGATAA CTCGTCGGCG 
GACGATTTCA TGAAGATCCA CGCAGCGTAT TGCACGCTTT CGGATCCCGA 
GAAACGCGCC GTTTATGATC GGAGGACTCT TCTTCGGAGC CGGCCGTTAA 
CGGCTGGATA CGGCAGTTAC GGTGGACGGA ATTGGGAAAC CGATCAGTGC 
TGGTAGCGAG TTGACTCGAT GTGTCGAGTT

Gene models with high sequence identity

  1. AT2G17880.1 [+] show detail - Chaperone DnaJ-domain superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
ProfileScan Heat shock protein DnaJ, N-terminal 17.132
superfamily Heat shock protein DnaJ, N-terminal 2e-19
HMMSmart Heat shock protein DnaJ, N-terminal 1.2e-17
Gene3D Heat shock protein DnaJ, N-terminal 5.3e-16
HMMPanther DNAJ-RELATED 1.4e-31
HMMPanther Molecular chaperone, heat shock protein, Hsp40, DnaJ 1.4e-31
HMMPfam Heat shock protein DnaJ, N-terminal 2e-20

See the detailed result >

AT2G17880.1

Model type
Protein coding
Short Description
Chaperone DnaJ-domain superfamily protein
Computational Description
Chaperone DnaJ-domain superfamily protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: Chaperone DnaJ-domain superfamily protein (TAIR:AT4G36040.1); Has 19677 Blast hits to 19677 proteins in 3133 species: Archae - 135; Bacteria - 8632; Metazoa - 3284; Fungi - 1660; Plants - 1836; Viruses - 5; Other Eukaryotes - 4125 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL03-08-H14 introduced

  • F11045 - Specific phenotypes were NOT observed.
  • F21941 - Specific phenotypes were NOT observed.
  • F22801 - Specific phenotypes were NOT observed.
  • F25047 - Specific phenotypes were NOT observed.
  • F25624 - Specific phenotypes were NOT observed.
  • F26521 - Specific phenotypes were NOT observed.
  • F30050 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

10 mutant lines found