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  3. RAFL03-08-H22

RAFL03-08-H22

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00149)

full reading [+] show sequence

Nucleotide sequence: RAFL03-08-H22 - full reading 
ACCCACATCT TCTAACAGTC TCTCACTTTC TCTCTTCTCT CTCTCTCTTT 
CTTTTTTGAG TCCGTGAAGG CTAAGTCTGA AAGAATGACG AAGGATGAGT 
TGACGGAGGA AGAGTCGCTC TCCGGCAAGG ACTACTTAGA CCCACCGCCT 
GTGAAGACGT TCGAGGTGAG AGAGCTCAAG AAGTGGTCCT TCTACAGAGC 
TGTCATCGCT GAGTTCATAG CTACTTTGCT CTTTCTATAC GTGACTGTTT 
TGACAGTCAT CGGCTTTAAG AGCCAGACTG ATATCAACGC CGGCGGCGGA 
GCTTGTGCCA GTGTCGGCCT CCTAGGCATC TCTTGGGCCT TTGGTGGCAT 
GATATTCATC CTCGTCTACT GCACTGCCGG CATCTCTGGT GGACACATCA 
ATCCCGCGGT GACGTTTGGG CTATTCCTAG CTAGCAAGGT ATCATTGGTT 
AGAGCTGTGT CGTACATGGT GGCTCAGTGT CTCGGAGCCA CTTGTGGAGT 
TGGTTTGGTG AAAGTCTTCC AGTCGACTTA TTACAACCGC TACGGTGGTG 
GAGCCAACAT GCTCTCCGAC GGATACAATG TTGGCGTTGG GGTTGGTGCT 
GAGATTATCG GCACTTTTGT CCTCGTCTAC ACCGTCTTCT CCGCTACCGA 
CCCTAAGCGA AATGCCCGTG ACTCTCACAT TCCTGTATTA GCACCATTGC 
CAATTGGATT TTCCGTGTTC ATGGTTCATT TAGCCACAAT TCCAATTACT 
GGCACCGGAA TAAACCCGGC TAGGAGTTTT GGAGCTGCCG TCATCTACAA 
CAATCAAAAG GCTTGGGATG ATCAGTGGAT CTTCTGGGTC GGTCCATTTG 
TGGGTGCAGC CATTGCAGCA TTTTACCATC AGTTTGTGTT GAGAGCTGGT 
GCAATGAAGG CCTATGGGTC AGTCAGGAGC CAGCTTCATG AGCTCCATGC 
TTAAATTTGT TATTTCGAAC TAGCGAAGAG GTGAAGAATT CTTTGGGCCA 
GGAAGGGAGG AAGGAAAAAA AAAAGGGACC CAAATCATAT AAAAGAAAAA 
ACGAATATTA TTTAAGATGG TCGGTGAGTG ACATTTACTG TGTCTTATTT 
GTGGCTTTGT GGGGGAGGTT TGTGTGTAAC AATTTGTAAC GTACAAGCAA 
TGTATGTGTT ATTTGATGC

Gene models with high sequence identity

  1. AT2G39010.1 [+] show detail - plasma membrane intrinsic protein 2E
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Gene3D Major intrinsic protein 2.4e-62
HMMTigr Aquaporin 2.7e-85
HMMPfam Major intrinsic protein 1.2e-83
FPrintScan Major intrinsic protein 4.3e-70
FPrintScan Major intrinsic protein 4.3e-70
FPrintScan Major intrinsic protein 4.3e-70
FPrintScan Major intrinsic protein 4.3e-70
FPrintScan Major intrinsic protein 4.3e-70
FPrintScan Major intrinsic protein 4.3e-70
HMMPanther AQUAPORIN-RELATED 4e-187
HMMPanther Major intrinsic protein 4e-187
superfamily Major intrinsic protein 3.8e-61
PatternScan Major intrinsic protein, conserved site 0

See the detailed result >

AT2G39010.1

Model type
Protein coding
Short Description
plasma membrane intrinsic protein 2E
Computational Description
plasma membrane intrinsic protein 2E (PIP2E); FUNCTIONS IN: water channel activity; INVOLVED IN: transport, response to nematode; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: plasma membrane intrinsic protein 2;5 (TAIR:AT3G54820.1); Has 10794 Blast hits to 10789 proteins in 2219 species: Archae - 81; Bacteria - 5177; Metazoa - 1475; Fungi - 441; Plants - 2519; Viruses - 2; Other Eukaryotes - 1099 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL03-08-H22 introduced

  • F12237 - rosette leaf::decreased size / rosette leaf::increased width / rosette leaf::present in fewer numbers in organism / stem::decreased thickness / cauline leaf::present in greater numbers in organism / cauline leaf::epinastic / whole plant::decreased height
  • F16537 - Specific phenotypes were NOT observed.
  • F16845 - Specific phenotypes were NOT observed.
  • F18109 - Specific phenotypes were NOT observed.
  • F22137 - Specific phenotypes were NOT observed.
  • F25519 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

7 mutant lines found