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RAFL03-09-N15

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00260)

full reading [+] show sequence

Nucleotide sequence: RAFL03-09-N15 - full reading 
ACTCCAACAG AGAAGCAAAA GAAAAAAAAG CTATTGTTTG AAAGAAGAAG 
AAGTTAACTA TGGCAAAGGA TGTGGAAGCC GTTCCCGGAG AAGGATTTCA 
GACAAGAGAC TATCAAGATC CGCCACCAGC TCCGTTTATT GATGGAGCGG 
AGCTAAAGAA GTGGTCTTTC TACAGAGCAG TTATCGCAGA GTTCGTAGCC 
ACTCTCCTCT TCTTATACAT CACCGTTTTG ACAGTCATCG GTTACAAGAT 
TCAGTCCGAT ACTGATGCCG GTGGCGTAGA TTGCGGCGGA GTTGGAATCC 
TCGGTATCGC TTGGGCCTTT GGTGGTATGA TCTTCATCCT CGTCTACTGC 
ACCGCCGGTA TCTCTGGTGG TCACATTAAC CCAGCGGTGA CATTTGGGCT 
ATTCTTGGCA CGTAAAGTGT CGTTACCTAG GGCCCTATTG TACATAATCG 
CTCAGTGTTT GGGTGCGATT TGTGGAGTTG GTTTTGTCAA AGCCTTCCAA 
AGCTCTTACT ACACCCGTTA CGGAGGTGGA GCCAACTCTC TAGCCGATGG 
CTACAGCACA GGGACCGGTC TAGCCGCAGA GATCATTGGT ACTTTCGTTC 
TTGTCTACAC CGTCTTCTCT GCCACTGACC CCAAACGTAG TGCCAGAGAC 
TCCCACGTTC CGGTGTTGGC GCCACTTCCA ATCGGATTTG CCGTGTTCAT 
GGTACATTTG GCTACCATTC CCATTACCGG AACCGGAATT AACCCGGCAA 
GGAGTTTCGG AGCTGCCGTA ATCTACAACA AGAGCAAGCC ATGGGATGAC 
CACTGGATAT TTTGGGTTGG ACCATTCATT GGAGCTGCGA TAGCTGCATT 
CTACCACCAA TTCGTTCTGA GAGCTTCAGG TTCTAAGTCT CTTGGATCAT 
TCAGAAGTGC TGCCAACGTC TAAACACATC AAACCAGATT TCTCAAGAAT 
AAATGAAGTT GTGATCTCTC TGTACAAATC TAAATCAGTC ACTTGCAGTT 
TTCATTTCCC TTTCTTATAT TTGTGTTTTC CACTTGCTCT TTTGTGAATT 
TTCCTTCGGT GTAATTGTTT TTTCTTTCGC TTTTAAACGA GTGATTGGAA 
TTATAATCAA TGAAATCAAA GAGGTTCCT

Gene models with high sequence identity

  1. AT3G53420.1 [+] show detail - plasma membrane intrinsic protein 2A
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily Major intrinsic protein 6.5e-63
HMMTigr Aquaporin 3.1e-88
HMMPanther AQUAPORIN-RELATED 1e-190
HMMPanther Major intrinsic protein 1e-190
Gene3D Major intrinsic protein 2.3e-65
FPrintScan Major intrinsic protein 6.5e-71
FPrintScan Major intrinsic protein 6.5e-71
FPrintScan Major intrinsic protein 6.5e-71
FPrintScan Major intrinsic protein 6.5e-71
FPrintScan Major intrinsic protein 6.5e-71
FPrintScan Major intrinsic protein 6.5e-71
HMMPfam Major intrinsic protein 3.3e-88
PatternScan Major intrinsic protein, conserved site 0

See the detailed result >

AT3G53420.1

Model type
Protein coding
Short Description
plasma membrane intrinsic protein 2A
Curator Summary
a member of the plasma membrane intrinsic protein subfamily PIP2. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed specifically in the vascular bundles and protein level increases slightly during leaf dev. When expressed in yeast cells can conduct hydrogen peroxide into those cells.
Computational Description
plasma membrane intrinsic protein 2A (PIP2A); FUNCTIONS IN: water channel activity; INVOLVED IN: response to water deprivation, response to salt stress, transport, hydrogen peroxide transmembrane transport, water transport; LOCATED IN: plasma membrane, chloroplast, vacuole, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: plasma membrane intrinsic protein 2 (TAIR:AT2G37170.1); Has 10900 Blast hits to 10884 proteins in 2233 species: Archae - 81; Bacteria - 5210; Metazoa - 1477; Fungi - 457; Plants - 2523; Viruses - 2; Other Eukaryotes - 1150 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL03-09-N15 introduced

  • F00829 - Specific phenotypes were NOT observed.
  • F01136 - Specific phenotypes were NOT observed.
  • F03440 - Specific phenotypes were NOT observed.
  • F03515 - Specific phenotypes were NOT observed.
  • F10008 - rosette leaf::dark green / rosette leaf::present in greater numbers in organism / stem::increased thickness / cauline leaf::increased size / stem::dark green / whole plant::increased height / seed::present in fewer numbers in organism / fruit::decreased length / stem internode::decreased length / stem::abnormal / root::present in greater numbers in organism
  • F10327 - Specific phenotypes were NOT observed.
  • F10806 - Specific phenotypes were NOT observed.
  • F16829 - Specific phenotypes were NOT observed.
  • F19736 - Specific phenotypes were NOT observed.
  • F19821 - Specific phenotypes were NOT observed.
  • F20734 - Specific phenotypes were NOT observed.
  • F22638 - Specific phenotypes were NOT observed.
  • F30322 - seed::increased size / seed::increased length / seed::decreased width

Mutant lines with disrupted or induced

14 mutant lines found