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  3. RAFL04-09-A19

RAFL04-09-A19

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00222)

full reading [+] show sequence

Nucleotide sequence: RAFL04-09-A19 - full reading 
ACCAACATAG ATCTCTCTCT TGCTGTGGCT CCTTTCTTCC TCTACACAGA 
TCTTTGGATT CAGAAGAAAG AGATCTAAAA TGGGTGCTGC TGAAAACAAC 
CTTGAAATGG AGGGTACCCT GGAGATCGGC ATGGAGTATA GAACTGTTTC 
TGGTGTTGCG GGACCTCTCG TCATCCTTGA AAAAGTCAAG GGGCCTAAAT 
ACCAAGAAAT TGTCAATATC CGTCTTGGGG ATGGAACTAC CCGACGTGGT 
CAAGTTCTCG AAGTTGATGG AGAGAAAGCT GTTGTTCAGG TATTTGAGGG 
AACATCTGGA ATCGACAACA AGTACACAAC TGTGCAATTT ACAGGAGAGG 
TTTTGAAAAC TCCTGTTTCT TTGGATATGC TTGGTCGCAT CTTCAATGGT 
TCAGGGAAGC CCATTGACAA CGGTCCACCT ATATTGCCTG AGGCGTACTT 
GGATATTTCT GGAAGTTCTA TCAATCCCAG TGAGAGAACC TATCCTGAAG 
AGATGATTCA GACGGGTATA TCCACCATTG ATGTCATGAA CTCTATCGCC 
AGAGGACAGA AGATTCCCCT CTTTTCTGCC GCAGGTCTTC CCCACAATGA 
AATTGCTGCT CAGATTTGCC GTCAGGCTGG TTTGGTTAAG CGTTTAGAGA 
AGTCAGATAA TCTTCTCGAG CATCAGGAGG ATGATAACTT CGCCATTGTG 
TTCGCAGCAA TGGGTGTGAA CATGGAGACT GCACAATTTT TTAAACGTGA 
TTTCGAGGAG AATGGATCGA TGGAGAGAGT GACTCTTTTC CTTAACTTGG 
CAAACGACCC CACTATTGAG CGTATCATCA CTCCTCGTAT CGCACTTACA 
ACTGCTGAGT ACTTGGCATA TGAATGTGGC AAGCATGTCC TTGTCATTCT 
CACAGACATG AGTTCCTACG CCGATGCTCT TCGTGAGGTC TCTGCTGCCC 
GTGAAGAAGT GCCTGGAAGG CGTGGTTACC CAGGTTACAT GTACACCGAC 
TTGGCTACCA TATACGAGAG AGCAGGGCGA ATTGAAGGGA GGAAAGGTTC 
CATCACTCAA ATTCCCATTT TAACCATGCC AAACGATGAT ATCACGCATC 
CCACACCAGA TCTGACAGGA TACATTACAG AGGGGCAAAT CTATATTGAC 
CGACAACTTC ACAATAGACA GATCTACCCT CCGATCAATG TCTTGCCATC 
TCTGTCTCGT CTCATGAAGA GTGCCATTGG TGAGGGTATG ACTCGCAGGG 
ACCACTCTGA TGTTTCTAAT CAATTGTATG CCAATTACGC TATTGGAAAG 
GACGTGCAGG CCATGAAAGC CGTGGTTGGA GAAGAAGCTC TTTCTTCCGA 
GGATCTGCTA TATCTTGAGT TCTTGGATAA GTTCGAGAGG AAGTTTGTGG 
CTCAGGGAGC TTATGATACC CGAAACATCT TCCAGTCACT CGACCTGGCA 
TGGACTCTCC TCAGAATCTT CCCCCGTGAG TTACTTCACC GTATACCCGC 
GAAAACCCTT GATCAGTTTT ACAGTCGCGA TACCACCAAC TGAAGAACAT 
AGTTTCTACT GCCTTGGTGT GATGATATGT CCAAATGCAT CTTTATTTTT 
TACTTCTGCG GTTGGATCAC ACCTCTGAGT CGTCCGTCCC AATAAATGGT 
GTTTGTTCCC AATCGCTAGA CCCTTTATTA TTGTCTTCGA AACTGAGCAA 
GCCAGGTTGA TTATTCTTTT TGTAAGAGAA ATTGAAATTC TTGTATAATT 
TATGAGATTT TGCATCTTTT TTTTGGGGTA CCAAATTACT GGTTCAGAAC 
AACATACATT TGTTTGTCTT ATTACTGTCA CGAATGTCAA TGCAGCTTCT 
TCTTCTTTTT TC

Gene models with high sequence identity

  1. AT4G38510.2 [+] show detail - ATPase, V1 complex, subunit B protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain 1.6e-61
HMMPfam ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal 7.7e-16
HMMPfam ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal 0.00000000000094
superfamily P-loop containing nucleoside triphosphate hyd 6e-89
HMMPanther V-TYPE ATP SYNTHASE BETA CHAIN 2.6e-245
HMMPanther ATP SYNTHASE 2.6e-245
HMMTigr ATPase, V1 complex, subunit B 0
PatternScan ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain, active site 0
Gene3D no description 5.9e-90
HAMAP VATB_MF_00310 55.547

See the detailed result >

AT4G38510.2

Model type
Protein coding
Short Description
ATPase, V1 complex, subunit B protein
Computational Description
ATPase, V1 complex, subunit B protein; FUNCTIONS IN: hydrogen ion transporting ATP synthase activity, rotational mechanism, hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, ATP binding, proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: proton transport, ATP metabolic process, ATP synthesis coupled proton transport; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, alpha/beta subunit, nucleotide-binding domain, active site (InterPro:IPR020003), ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal (InterPro:IPR000793), ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal (InterPro:IPR004100), ATPase, alpha/beta subunit, nucleotide-binding domain (InterPro:IPR000194), ATPase, V1 complex, subunit B (InterPro:IPR005723); BEST Arabidopsis thaliana protein match is: ATPase, V1 complex, subunit B protein (TAIR:AT1G76030.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-09-A19 introduced

  • F03001 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found