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  3. RAFL04-09-C05

RAFL04-09-C05

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00200)

full reading [+] show sequence

Nucleotide sequence: RAFL04-09-C05 - full reading 
ATGACGGCAG GCAACAAGCA AAGCACGAAG TCATCTTCTT CCTATTTCTT 
CTATTCCTCC TTCTCCACGC TTCTTCTTCT TCTTCCTCAA TCTCTCTTAC 
GATTCCTTCA AATCATTCTT CCATGGCCAC CGTATCTTCT TCCTCCTGGC 
CAAACCCCAA CCCTAATCCC GATTCCACGT CTGCCTCAGA TTCCGATTCT 
ACTTTTCCCT CTCACCGCGA TCGCGTAGAC GAACCCGACT CTCTCGATTC 
CTTCTCCTCC ATGAGTCTTA ACTCCGACGA ACCTAATCAG ACTTCTAATC 
AATCGCCTCT TTCTCCCCCT ACGCCCAATT TACCGGTGAT GCCTCCTCCG 
TCCGTGCTTC ATCTTTCCTT TAACCAAGAT CATGCTTGCT TCGCTGTCGG 
CACTGACCGT GGCTTCCGGA TCCTTAATTG CGATCCCTTT CGCGAGATTT 
TCCGGCGTGA TTTCGATCGT GGCGGTGGTG TTGCAGTCGT GGAGATGCTT 
TTCAGATGCA ATATATTAGC CCTAGTTGGT GGCGGACCTG ATCCTCAATA 
TCCTCCTAAT AAGGTTATGA TTTGGGATGA TCACCAGGGC CGATGTATCG 
GAGAACTCTC TTTCAGGTCC GATGTTAGAT CCGTCCGGCT TAGGAGGGAT 
CGGATTATTG TCGTTCTTGA GCAGAAGATT TTTGTCTACA ATTTCTCTGA 
CCTCAAGCTG ATGCATCAGA TTGAAACCAT TGCCAACCCT AAGGGTTTGT 
GTGCTGTTTC TCAGGGTGTT GGTTCTATGG TTTTGGTATG TCCAGGTTTG 
CAGAAAGGTC AAGTTCGGAT CGAGCACTAC GCTTCTAAAC GGACCAAATT 
CGTCATGGCT CATGATTCCA GAATAGCTTG CTTCGCTCTC ACGCAGGATG 
GCCATTTGTT GGCCACTGCT AGCTCTAAGG GTACTCTGGT TCGGATCTTC 
AATACTGTTG ATGGTACCTT GCGTCAAGAG GTAAGGAGGG GTGCGGATAG 
AGCAGAGATC TACAGTTTGG CCTTCTCTTC AAATGCTCAG TGGTTAGCTG 
TCTCAAGTGA CAAAGGAACG GTCCATGTCT TTGGTCTCAA AGTCAACTCC 
GGATCTCAAG TGAAAGACTC ATCCCGAATT GCACCTGATG CTACTCCCTC 
ATCCCCATCG TCGTCTCTGT CTTTATTCAA AGGAGTGTTA CCGAGGTATT 
TCAGCTCGGA GTGGTCGGTG GCTCAGTTCA GGTTGGTTGA AGGAACTCAG 
TACATAGCCG CCTTTGGCCA TCAAAAGAAC ACCGTTGTTA TTCTTGGCAT 
GGATGGGAGC TTCTACAGAT GCCAGTTTGA TCCGGTGAAC GGCGGTGAAA 
TGTCTCAGCT TGAGTACCAC AACTGTCTGA AACCGCCTTC AGTTTTCTAA 
AAGCTTTACT ACTTATACTC TTTTGTTCCT TCTCTCTCTT TATATCTCTC 
TGCAACTTAA GCGGTGAGAT ATGGTGTATA GTTTTGTGTA TATAATAATG 
ATGGGTCGTC CTATAATTTG TAAAACCTTT TATCGC

Gene models with high sequence identity

  1. AT3G62770.1 [+] show detail - Transducin/WD40 repeat-like superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Gene3D WD40/YVTN repeat-like-containing domain 3.1e-15
HMMSmart WD40 repeat 340
HMMSmart WD40 repeat 0.061
HMMSmart WD40 repeat 0.14
superfamily WD40 repeat-like-containing domain 6.3e-32
HMMPanther WIPI-3,4 4.6e-201
HMMPanther WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINO 4.6e-201
HMMPfam WD40 repeat, subgroup 0.078
HMMPfam WD40 repeat, subgroup 0.062

See the detailed result >

AT3G62770.1

Model type
Protein coding
Short Description
Transducin/WD40 repeat-like superfamily protein
Curator Summary
Required for autophagosome formation during nutrient deprivation and senescence.
Computational Description
AtATG18a; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: autophagy, leaf senescence, response to starvation; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: homolog of yeast autophagy 18 (ATG18) D (TAIR:AT3G56440.1); Has 1516 Blast hits to 1443 proteins in 266 species: Archae - 0; Bacteria - 93; Metazoa - 578; Fungi - 450; Plants - 210; Viruses - 2; Other Eukaryotes - 183 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-09-C05 introduced

  • F09519 - Specific phenotypes were NOT observed.
  • F09813 - Specific phenotypes were NOT observed.
  • F21716 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

9 mutant lines found