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RAFL04-09-C19

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00234)

full reading [+] show sequence

Nucleotide sequence: RAFL04-09-C19 - full reading 
ACGTTTACTT TTATTATAAA CAGATTTCTG GAGATATCGA GAACATTTTC 
GCAGCCGCAA GCTACAAAAC TTTTGATCCC AAATTCAACA GATATCTCTG 
AATCTATCGC TTCCAAGGGT TTTCTCTAGC TTAATCTCAG ATTCGAATCG 
TTCCATAGTG ATACTATGCC GAAGAACAAG GGAAAGGGAG GAAAGAACAG 
GAAGAGAGGA AAGAACGAAG CAGATGACGA GAAGAGAGAG CTTATATTCA 
AAGAAGATGG ACAAGAATAC GCACAAGTCC TTCGTATGCT TGGAAATGGA 
AGATGTGAAG CTATGTGTAT CGATGGAACC AAGCGTCTTT GCCATATCCG 
TGGTAAGATG CATAAGAAGG TTTGGATTGC AGCAGGTGAT ATTGTGCTTG 
TTGGTTTGAG GGATTACCAA GATGACAAAG CGGATGTGAT CCTTAAGTAC 
ATGTCTGATG AGGCTAGGCT TCTTAAGGCT TATGGTGAGC TTCCAGAGAA 
TACTCGTCTT AATGAAGGAA TTGTTGGTGA TCTTGAGGAT GATGATGATA 
ATAATGATGA TGACTATGTT GAGTTTGAGG ACGAAGATAT CGATAGGGTC 
TAAGGCTTTG TTTGTTTTTT TTTTTTCCGG CTTGTATTTC CAATTTGTGA 
GACGTATGAC TTCTGGTGAT AAAACATCAC TGTTGTTGCA AGATACTTAC 
TGTTTTATAT TTTGTTCTTC AATATCTCTA TTGTTGGTTC C

Gene models with high sequence identity

  1. AT2G04520.1 [+] show detail - Nucleic acid-binding, OB-fold-like protein
    E-value: 0; Score: 99.86

 

InterPro Scan Digest

Program Description E-value
HMMPfam S1, IF1 type 2.1e-27
PatternScan Translation initiation factor 1A (eIF-1A), conserved site 0
HMMPanther Translation initiation factor 1A (eIF-1A) 8.9e-78
superfamily Nucleic acid-binding, OB-fold-like 5.4e-50
HMMSmart Translation initiation factor 1A (eIF-1A) 6.2e-49
Gene3D Nucleic acid-binding, OB-fold 7.5e-53
ProfileScan S1, IF1 type 31.796
BlastProDom Translation initiation factor 1A (eIF-1A) 1e-25
HMMTigr Translation initiation factor 1A (eIF-1A) 1.3e-34

See the detailed result >

AT2G04520.1

Model type
Protein coding
Short Description
Nucleic acid-binding, OB-fold-like protein
Computational Description
Nucleic acid-binding, OB-fold-like protein; FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), S1, IF1 type (InterPro:IPR006196), Translation initiation factor 1A (eIF-1A), conserved site (InterPro:IPR018104), Translation initiation factor 1A (eIF-1A) (InterPro:IPR001253); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, OB-fold-like protein (TAIR:AT5G35680.2); Has 921 Blast hits to 921 proteins in 273 species: Archae - 305; Bacteria - 0; Metazoa - 209; Fungi - 83; Plants - 55; Viruses - 0; Other Eukaryotes - 269 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-09-C19 introduced

  • F19707 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

7 mutant lines found