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  3. RAFL04-09-D07

RAFL04-09-D07

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02284)

full reading [+] show sequence

Nucleotide sequence: RAFL04-09-D07 - full reading 
AAGCTTTTTT TACAAAAGAC GTACACGTCT CTCTCTCTCA CTCCCTCTTT 
AAGATCAGAA GCTCATTTCT TCGATACGAT CAACCATTAG AGATGGGTTC 
GGCGAACAAC GAGTACGAGT TTCTGAGTGA GATTGGGCTG ACTTCTCACA 
ACTTGGGATC TTACGTTGCT GGCAAATGGC AAGCCAACGG ACCTCTTGTT 
TCAACTCTCA ATCCTGCTAA CAATCAGCCA ATTGCTCAAG TTGTGGAAGC 
TTCTCTAGAG GATTACGAGC AAGGTTTGAA AGCTTGCGAG GAAGCAGCTA 
AAATATGGAT GCAGGTTACG GCTCCTAAGA GAGGTGATAT CGTCAGACAG 
ATTGGGGATG CACTAAGATC CAAACTTGAC TATCTTGGTC GTCTTCTTTC 
TCTTGAAATG GGAAAGATCC TTGCTGAAGG TATTGGAGAA GTTCAGGAAG 
TAATTGACAT GTGTGATTTT GCTGTTGGTT TGAGCCGACA ACTCAATGGA 
TCGGTTATAC CTTCAGAACG CCCTAACCAC ATGATGTTGG AGATGTGGAA 
TCCTCTTGGC ATTGTTGGTG TTATCACAGC GTTTAATTTT CCCTGTGCAG 
TTCTTGGTTG GAATGCTTGT ATTGCTCTTG TCTGTGGAAA CTGTGTAGTC 
TGGAAAGGTG CTCCAACTAC ACCGTTAATA ACTATCGCAA TGACCAAGCT 
AGTAGCTGAA GTTTTAGAGA AAAACAACTT ACCCGGTGCC ATTTTTACGG 
CCATGTGTGG TGGTGCTGAA ATTGGTGAAG CAATAGCCAA AGACACACGC 
ATTCCCTTAG TATCCTTTAC TGGAAGCTCC AGGGTGGGCT CAATGGTACA 
ACAAACAGTG AATGCGAGAT CTGGGAAAAC TTTGCTTGAG TTGAGTGGAA 
ACAATGCAAT CATAGTCATG GACGATGCTG ATATACAGTT AGCGGCTCGA 
TCTGTTCTAT TCGCTGCGGT TGGAACTGCT GGTCAACGTT GCACAACTTG 
CCGTAGGCTG CTTTTGCATG AGAGTGTCTA TGACAAAGTA CTCGAGCAAC 
TGCTTACCTC ATACAAACAA GTCAAAATCG GCAATCCTCT TGAGAAAGGG 
ACATTGTTAG GACCATTACA TACTCCTGAA TCAAAAAAGA ACTTTGAGAA 
AGGAATTGAA GTCATCAAAT CCCAGGGTGG TAAAATACTA ACGGGAGGTA 
AAGCAGTCGA AGGTGAAGGA AACTTTGTGG AGCCTACGAT AATCGAGATA 
TCAGCAGATG CTGCTGTCGT CAAAGAAGAG CTATTTGCTC CGGTTCTATA 
TGTTCTAAAG TTTAAGTCAT TTGGAGAGGC TGTTGCGATA AACAACTCGG 
TTCCTCAAGG TCTAAGCAGC TCGATATTCA CTCGGAACCC TGAAAACATC 
TTCAGGTGGA TCGGACCACT GGGAAGTGAC TGTGGCATTG TGAATGTGAA 
CATACCGACG AATGGAGCTG AGATTGGTGG AGCTTTTGGA GGCGAGAAAG 
CGACTGGTGG TGGTCGTGAA GCTGGAAGCG ACTCATGGAA ACAGTACATG 
CGTCGATCGA CTTGTACCAT CAACTATGGA AACGAGTTAC CTCTAGCGCA 
AGGAATTAAC TTCGGTTAGA TTTTTCAGAG ATTTACTCGT TAATTAATAA 
TGTTATGTTG GTTCGATTTC GATACTTGTA TTGTATGCCT TGTTCTCTCC 
AAGCCTTTGA CTTAAGATGA TTACGCTTTT AATATATATA AAAAAATATT 
GAATAG

Gene models with high sequence identity

  1. AT1G54100.1 [+] show detail - aldehyde dehydrogenase 7B4
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Coil coiled-coil 0
superfamily Aldehyde/histidinol dehydrogenase 2.7e-141
PatternScan Aldehyde dehydrogenase, conserved site 0
Gene3D Aldehyde dehydrogenase, N-terminal 5.6e-79
HMMPfam Aldehyde dehydrogenase 2.1e-129
HMMPanther ALDEHYDE DEHYDROGENASE 7 0
HMMPanther Aldehyde dehydrogenase 0

See the detailed result >

AT1G54100.1

Model type
Protein coding
Short Description
aldehyde dehydrogenase 7B4
Curator Summary
Aldehyde dehydrogenase
Computational Description
aldehyde dehydrogenase 7B4 (ALDH7B4); FUNCTIONS IN: 3-chloroallyl aldehyde dehydrogenase activity, oxidoreductase activity; INVOLVED IN: response to desiccation, response to salt stress, response to abscisic acid stimulus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aldehyde/histidinol dehydrogenase (InterPro:IPR016161), Aldehyde dehydrogenase (InterPro:IPR015590), Aldehyde dehydrogenase, N-terminal (InterPro:IPR016162), Aldehyde dehydrogenase, conserved site (InterPro:IPR016160); BEST Arabidopsis thaliana protein match is: aldehyde dehydrogenase 5F1 (TAIR:AT1G79440.1); Has 58805 Blast hits to 58641 proteins in 2995 species: Archae - 475; Bacteria - 35443; Metazoa - 2491; Fungi - 2112; Plants - 1217; Viruses - 0; Other Eukaryotes - 17067 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-09-D07 introduced

  • F10020 - Specific phenotypes were NOT observed.
  • F10730 - Specific phenotypes were NOT observed.
  • F11809 - Specific phenotypes were NOT observed.
  • F17804 - Specific phenotypes were NOT observed.
  • F19206 - rosette leaf::increased size / cauline leaf::hyponastic / whole plant::increased height
  • F22919 - Specific phenotypes were NOT observed.
  • F25129 - Specific phenotypes were NOT observed.
  • F26330 - Specific phenotypes were NOT observed.
  • F27744 - Specific phenotypes were NOT observed.
  • F28121 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

10 mutant lines found