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RAFL04-09-P12

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00549)

full reading [+] show sequence

Nucleotide sequence: RAFL04-09-P12 - full reading 
AAAAAAAAAA AAAAAAAAGA CACCCTCCAC AAAATATCAA TTTTCTTCCA 
AAACAATGTC TTCATTAAAA CGCATCGTTT GGTTCCCTAT CTTGGCCATA 
GCCATACAAA TTCTCTCTAT ACATACCGTT TTGTCTCAAA GCCAGAACAA 
TGCGTTTCTC TTCCACAAGT GCTCAGACAT CGAAGGAAGC TTTACCTCAA 
AAAGTCTCTA CGAGTCAAAT CTCAACAATC TCTTTAGTCA GCTCTCTTAC 
AAAGTTCCAT CCACCGGTTT TGCCGCCTCC TCCACTGGCA ACACTCCAAA 
CAACGTCAAC GGTTTGGCCC TTTGCCGCGG TGATGCCTCC TCCTCTGACT 
GCCGCTCTTG TCTTGAGACT GCCATCCCCG AGCTACGTCA GAGATGTCCG 
AACAACAAGG CGGGAATAGT ATGGTATGAC AACTGTCTTG TAAAGTATTC 
CTCGACCAAT TTCTTCGGGA AGATAGATTT CGAGAACAGG TTCTATTTGT 
ACAACGTCAA AAATGTGAGT GATCCATCAA CATTCAACTC GCAGACGAAA 
GCTCTTTTAA CCGAGCTGAC AAAGAAAGCG ACTACTAGAG ATAACCAGAA 
GCTATTTGCG ACAGGAGAGA AAAATATCGG AAAGAATAAA TTGTACGGAC 
TAGTGCAATG TACGAGGGAC TTGAAGAGTA TTACTTGTAA GGCGTGTTTA 
AATGGAATTA TTGGGGAGCT TCCTAACTGT TGCGACGGTA AAGAAGGAGG 
GAGAGTTGTG GGTGGGAGCT GTAACTTTAG GTATGAGATT TACCCTTTTG 
TTAAGACTGC TTGATTAGAG GTCCAAGTTA AAAGGGGGTC CAATGCCAAA 
CACGGTCTTA ATTTGTGATT ATTGTCAATG TGATATGTAT TGTATGTTGT 
TGTTTGTATA ATGTGTTGAG CCAGTAAAAT GTAATCTTCT CTTTGTGGGT 
TATTTGTACG ATAGACACGA TTATAGAGGC TTGACTCCTA TAAATAAAAA 
CATTCCCTTT GCCAAATGAA AAAAAAAAAA AAAA

Gene models with high sequence identity

  1. AT3G22060.1 [+] show detail - Receptor-like protein kinase-related family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Protein of unknown function DUF26 2.7e-20
HMMPfam Protein of unknown function DUF26 5.5e-20

See the detailed result >

AT3G22060.1

Model type
Protein coding
Short Description
Receptor-like protein kinase-related family protein
Curator Summary
contains Pfam profile: PF01657 Domain of unknown function that is usually associated with protein kinase domain Pfam:PF00069, however this protein does not have the protein kinase domain
Computational Description
Receptor-like protein kinase-related family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to abscisic acid stimulus; LOCATED IN: cell wall, vacuole; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF26) (TAIR:AT3G58310.1); Has 1682 Blast hits to 1490 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1682; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-09-P12 introduced

  • F21934 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

4 mutant lines found