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Full-length cDNAs
RAFL04-09-P15

RAFL04-09-P15

RIKEN Arabidopsis Full-length cDNAs

ATCTCTCTCT CTTTCCGTCT TCATCGTCCT CCCGGCTTCT GCGATTTTGT 
TTAGTAGCGC CGGACCGGAG TAGTTAAAAC CCTAGCCCAG TCTATTTAAA 
GATTCACCGA GTAGTCTTCT AGTCCTGCGT ATACTTCTTC TTCTTCGTTT 
ATACTTAGAA GATGAATTGT GCAATTTCCG GCGAAGTTCC GGAGGAGCCT 
GTGGTTTCTA AGAAGTCGGG TTTGCTTTAC GAGAAGCGGC TAATCCAGAC 
GCATATATCC GATTATGGGA AATGCCCGGT TACTGGTGAG CCACATACTC 
TTGATGACAT TGTTCCCATC AAAACTGGGA AGATCGTAAA GCCGAAACCA 
TTACACACAG CTAGCATCCC TGGATTGCTT GGAACGTTTC AGACTGAATG 
GGACAGTTTG ATGCTATCAA ATTTTGCTTT GGAACAACAA CTGCATACTG 
CGAGGCAAGA GCTAAGTCAC GCTTTGTATC AGCATGATGC TGCTTGTCGT 
GTGATTGCTA GGCTTAAAAA AGAAAGAGAC GAATCACGAC AATTGCTTGC 
AGAGGCTGAA AGGCAGTTGC CTGCAGCCCC CGAAGTTGCC ACATCGAATG 
CTGCTCTTAG TAATGGTAAA CGAGGTATCG ATGATGGTGA GCAGGGGCCT 
AATGCAAAGA AAATGCGTCT TGGAATTTCG GCTGAAGTTA TCACAGAACT 
CACAGATTGT AATGCTGCTC TTTCTCAGCA GCGTAAAAAG AGACAGATCC 
CTAAAACATT GGCTTCAGTC GATGCTCTGG AGAAGTTCAC CCAACTCTCA 
AGCCACCCCC TTCACAAGAC CAACAAACCT GGAATTTTTT CAATGGACAT 
CCTACATTCT AAGGATGTCA TCGCTACGGG AGGAATTGAT ACAACTGCCG 
TTCTCTTTGA TCGTCCTTCA GGACAAATCT TATCAACGCT GACTGGTCAC 
TCAAAGAAGG TTACAAGCAT CAAGTTCGTT GGTGACACTG ATCTTGTGTT 
AACTGCTTCA TCCGACAAGA CAGTCCGCAT CTGGGGATGT TCCGAGGATG 
GGAACTATAC CTCTAGACAT ACACTGAAAG ATCATTCTGC CGAGGTGCGA 
GCTGTAACTG TCCACGCAAC GAATAAATAC TTTGTGTCAG CATCACTTGA 
CAGTACATGG TGCTTCTATG ATCTGTCCTC CGGTTTATGC CTTGCTCAGG 
TGACAGATGC TTCCGAAAAC GACGTGAATT ACACGGCTGC TGCTTTTCAT 
CCTGATGGTC TCATTCTTGG AACTGGTACC GCTCAATCTA TTGTTAAGAT 
TTGGGATGTA AAAAGTCAGG CAAATGTGGC AAAGTTTGGT GGACACAATG 
GAGAAATCAC CTCTATATCA TTCTCTGAAA ACGGTTATTT CCTTGCGACT 
GCTGCACTGG ATGGTGTTAG GTTGTGGGAC TTGCGCAAGT TAAAGAACTT 
CCGAACCTTT GACTTTCCAG ATGCAAACTC GGTGGAGTTT GACCATAGCG 
GATCTTATCT TGGCATTGCT GCTTCAGATA TAAGAGTATT CCAAGCAGCT 
AGTGTAAAAG CAGAATGGAA CCCAATCAAG ACTCTTCCCG ATCTGTCCGG 
TACAGGTAAA GCAACAAGTG TTAAGTTTGG ACTCGACTCC AAATACATAG 
CAGTCGGTTC AATGGACCGT AATCTCAGGA TATTTGGTTT ACCTGATGAT 
GACAATACTG AAGATTCAGC ACAAGATTCA TGAAGAGATA TCTCAAAAGT 
CTCATCATCA AGAGTAGCTA TATCCTCAAT TCTCGCGATT TTTGTTGTAT 
CTTTACAGTT CTGTTGGTAC TTTCCTGATG GCCCCTCTCA CAATCACATA 
TACACACCTG AGCTCTCTCC CTTTCTTTCT CAGTCAACAA TTTTCCTGTA 
ACAACATCGT ACCTTAAGGA TCTGCAGTTG ATCTTTCTCT CTCAAAAAAA 
AAAAAAAAA

Gene models with high sequence identity

AT1G04510.1 [+] show detail - MOS4-associated complex 3A
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
Gene3D	no description	7e-18
Gene3D	WD40/YVTN repeat-like-containing domain	3.1e-55
HMMPanther	PRE-MRNA SPLICING FACTOR PRP19	0
HMMPanther	PRE-MRNA SPLICING FACTOR PRP19-RELATED	0
ProfileScan	WD40 repeat 2	14.585
ProfileScan	WD40 repeat 2	9.071
ProfileScan	WD40 repeat 2	9.94
ProfileScan	WD40 repeat 2	10.408
ProfileScan	WD40-repeat-containing domain	34.539
HMMPfam	WD40 repeat, subgroup	5.2e-10
HMMPfam	WD40 repeat, subgroup	9.6e-05
HMMPfam	WD40 repeat, subgroup	0.098
HMMPfam	WD40 repeat, subgroup	5e-07
HMMPfam	WD40 repeat, subgroup	0.027
HMMPfam	Pre-mRNA-splicing factor 19	5.5e-31
superfamily	WD40 repeat-like-containing domain	1.3e-60
Coil	coiled-coil	0
HMMSmart	U box domain	2.1e-22
HMMSmart	WD40 repeat	3.3
HMMSmart	WD40 repeat	1.9e-08
HMMSmart	WD40 repeat	7.8e-06
HMMSmart	WD40 repeat	1.7
HMMSmart	WD40 repeat	1e-07
HMMSmart	WD40 repeat	83
HMMSmart	WD40 repeat	0.14

See the detailed result >

AT1G04510.1

Model type: Protein coding
Short Description: MOS4-associated complex 3A
Curator Summary: Encodes MAC3A, a U-box proteins with homology to the yeast and human E3 ubiquitin ligase Prp19. Associated with the MOS4-Associated Complex (MAC). Involved in plant innate immunity.
Computational Description: MOS4-associated complex 3A (MAC3A); FUNCTIONS IN: ubiquitin-protein ligase activity, nucleotide binding; INVOLVED IN: response to cadmium ion, defense response to bacterium; LOCATED IN: nucleolus, nucleus, CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), U box domain (InterPro:IPR003613), WD40 repeat (InterPro:IPR001680), Pre-mRNA-splicing factor 19 (InterPro:IPR013915), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: MOS4-associated complex 3B (TAIR:AT2G33340.2); Has 53700 Blast hits to 26315 proteins in 787 species: Archae - 70; Bacteria - 7824; Metazoa - 20612; Fungi - 11571; Plants - 6404; Viruses - 0; Other Eukaryotes - 7219 (source: NCBI BLink).
Link: InterPro Scan - TAIR

Mutant lines with RAFL04-09-P15 introduced

F24950 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

9 mutant lines found