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  3. RAFL04-10-F12

RAFL04-10-F12

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00289)

full reading [+] show sequence

Nucleotide sequence: RAFL04-10-F12 - full reading 
AGAGCTAACC CCGGAGAGCT TACAGAATTC AAGCTAAACA TTGTTAGAGA 
GAAAGAGAGA GCGATAATGG CGATGAGGGG CTTCACGTTG TTTTCGATCC 
TTGTGTTGTC TTTGTGCGCT TCGTCTATCA GAAGCGAAGA GACGGAGACG 
AAGGAGTTCG TGTTGACCTT GGATCACACT AACTTCACCG ATACCATCAA 
CAAACACGAT TTCATCGTCG TCGAGTTCTA CGCCCCATGG TGTGGACACT 
GCAAGCAGCT TGCTCCTGAG TATGAGAAGG CTGCGTCAGC TTTGAGCAGT 
AACGTCCCAC CAGTGGTTCT TGCTAAGATT GATGCCAGTG AGGAAACAAA 
CAGAGAATTT GCAACTCAAT ACGAGGTTCA GGGTTTCCCA ACAATCAAGA 
TTTTCAGAAA CGGAGGAAAG GCTGTTCAAG AATACAACGG ACCTCGTGAA 
GCTGAGGGTA TTGTTACTTA CTTGAAGAAA CAAAGTGGAC CTGCTTCTGC 
TGAAATTAAG TCAGCTGATG ATGCTTCTGA GGTTGTTAGT GACAAGAAGG 
TTGTTGTGGT TGGGATTTTC CCTAAACTAT CTGGCTCCGA GTTTGATTCT 
TTCATGGCCA TTGCTGAGAA ATTGCGCTCT GAGTTAGATT TCGCACATAC 
CTCGGATGCC AAGCTTCTTC CCCGTGGAGA GTCATCTGTA ACAGGACCTG 
TGGTCAGGCT ATTCAAACCC TTTGATGAAC AATTTGTTGA TTCCAAGGAT 
TTCGATGGTG AAGCTCTGGA GAAATTTGTC AAAGAATCCA GCATTCCACT 
TATCACCGTC TTTGACAAAG ATCCAAACAA CCACCCATAT GTTATCAAGT 
TCTTTGAAAG CACTAATACC AAGGCGATGT TGTTCATTAA CTTCACTGGA 
GAAGGAGCTG AGTCTCTTAA ATCAAAGTAC CGTGAAGTTG CTACATCCAA 
CAAGGGACAG GGTCTTAGCT TCCTTCTAGG TGATGCTGAG AACAGCCAAG 
GTGCATTCCA GTACTTTGGA CTCGAAGAGA GCCAAGTTCC TCTCATCATC 
ATCCAGACTG CTGACGACAA GAAATACCTG AAAACAAATG TTGAGGTTGA 
CCAGATTGAA TCATGGGTCA AGGACTTCAA GGATGGAAAA ATTGCTCCCC 
ACAAAAAATC TCAACCTATC CCAGCCGAAA ACAACGAGCC AGTGAAGGTT 
GTTGTTTCTG ACAGCCTTGA CGACATTGTC TTAAACTCTG GAAAGAACGT 
TTTGCTTGAA TTCTATGCTC CATGGTGTGG ACACTGCCAA AAGCTTGCTC 
CAATCTTGGA CGAAGTTGCT GTGTCGTACC AAAGCGACTC AAGTGTAGTC 
ATCGCTAAGC TAGATGCAAC CGCAAACGAC TTCCCAAAAG ATACCTTTGA 
TGTGAAGGGA TTCCCGACCA TTTACTTCAA ATCAGCGAGC GGAAACGTTG 
TGGTTTACGA AGGAGACAGG ACAAAGGAAG ATTTCATAAG CTTCGTCGAC 
AAGAACAAGG ACACAGTTGG AGAGCCTAAG AAGGAGGAAG AGACAACTGA 
GGAAGTCAAG GATGAGCTCT GAAAAGAGAA GTGTGTTGTG TCTCTTAGCT 
GCTAGCTTAG TTTGGTAGTT TTGAGGAAAA TACACAGAAG AAGACAGAGC 
ATTGAGTAGA CTGAGAGACA GAGAGAGAGA GACGACAGAC AGACAGAGAG 
AATCTCTTTA TCTATTCATT AGGTTTTTAT ATGTGCACTC TTCAGAACAA 
TAATGGCTGC CTCCTTTTCT TTTTTTTGGT TGATGTTACC TTTTTTTGTT 
TGAATTCAGT TCTCCTTTAA TATAGTTTTT GAGCCAAAAA AAAAAAAAAA

Gene models with high sequence identity

  1. AT1G21750.1 [+] show detail - PDI-like 1-1
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
ProfileScan Thioredoxin-like 15.467
ProfileScan Thioredoxin-like 16.619
PatternScan Thioredoxin, conserved site 0
PatternScan Thioredoxin, conserved site 0
HMMPanther PROTEIN DISULFIDE ISOMERASE 3.9e-113
HMMTigr Protein disulphide isomerase 4.8e-199
HMMTigr Disulphide isomerase 2.3e-49
HMMTigr Disulphide isomerase 1.6e-40
FPrintScan Thioredoxin-like subdomain 1.3e-07
FPrintScan Thioredoxin-like subdomain 1.3e-07
FPrintScan Thioredoxin-like subdomain 1.3e-07
HMMPfam Thioredoxin domain 7.4e-32
HMMPfam Thioredoxin domain 5.6e-27
Gene3D Thioredoxin fold 1.2e-32
Gene3D Thioredoxin fold 2.1e-14
Gene3D Thioredoxin fold 1.8e-27
superfamily Thioredoxin-like fold 2.4e-34
superfamily Thioredoxin-like fold 1.3e-31
superfamily Thioredoxin-like fold 2e-20
superfamily Thioredoxin-like fold 9.2e-14

See the detailed result >

AT1G21750.1

Model type
Protein coding
Short Description
PDI-like 1-1
Curator Summary
Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily; isoform contains non-consensus GA donor splice site at intron 9. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). Neither AtIRE1-2 nor AtbZIP60 appear to be required for this response.
Computational Description
PDI-like 1-1 (PDIL1-1); FUNCTIONS IN: protein disulfide isomerase activity; INVOLVED IN: in 6 processes; LOCATED IN: in 8 components; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Disulphide isomerase (InterPro:IPR005788), Thioredoxin fold (InterPro:IPR012335), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Protein disulphide isomerase (InterPro:IPR005792), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: PDI-like 1-2 (TAIR:AT1G77510.1); Has 31573 Blast hits to 17834 proteins in 2924 species: Archae - 337; Bacteria - 15428; Metazoa - 5451; Fungi - 1644; Plants - 2422; Viruses - 29; Other Eukaryotes - 6262 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-10-F12 introduced

  • F09409 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

9 mutant lines found