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RAFL04-10-J03

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00492)

full reading [+] show sequence

Nucleotide sequence: RAFL04-10-J03 - full reading 
AAAAGGTCTT CTTCGGAAGC AAGCTAAGTC ATGGCAACGA TTTCGTCAAC 
TCTACTCTTA AATTCTTCTA GATCAGCTTT ACCACTAAGA TTCCCAAAAT 
TCTCGGGATT TTCTTCTTCC TCTCCATTCG CTAGATCTTA CAGATTTGGA 
CGACGTAATC TGGAACCACT TTCCAACGGA ATGCTTTCGT CGGGAAGTAG 
AGCCGACGGT GCTACGGCGG CGGCTGCATC GATGGAAGGA GTGATGACGG 
AGGCGATGAA ACTGATTCAA TCGGCGTCAC CAACTTGGAA ATCAGCTGTG 
GCTAACAATT TATTGATTTT TGTTCTCGGT TCACCGCTTC TTGTTACCGG 
ATTGTCCGCT TCTGGGATCG CCGCCGCGTT TTTGCTTGGT ACTTTAACTT 
GGAGAGCTTA TGGCTCTGCT GGTTTCCTCT TAGTCGCTGC TTACTTCGTC 
ATAGGAACAG CGGCAACGAA GGTTAAAATG ACGCAAAAGG AAGCACAAGG 
TGTGGCCGAA AAGAGAAAGG GTAGAAGAGG ACCACGCAGT GTGATTGGTT 
CAAGTGCTGC TGGTTGTGTC TGTGCTTTTC TTTCAATATA TCAAGTGGGA 
GGAGCAGCTT TTTCCCAGCT TTTCCGGCTT GGTTTTGTTT CCAGTTTCTG 
CACTAAAGTA TCTGACACTG TCTCGAGCGA GATAGGCAAA GCTTATGGAA 
AAACAACGTA TTTAGCTACG ACATTTAAGA TTGTACCAAG AGGAACAGAG 
GGAGCTATGA GTCTTGAAGG AACATTGGCT GGACTTTTAG CATCATTTTT 
TCTTGCATCT GTTGGCTGCT TCCTGGGTCA GATAACTCCT CCAGAAGCAG 
CTGTATGTGT ACTAGCTTCC CAGATTGCCA ATCTTGGAGA GAGCATAATA 
GGTGCTTCTT TTCAAGACAA AGAAGGATTC AAATGGCTAA ACAATGATGT 
AGTCAACGTG ATCAACATAA GCTTGGGAAG CATTGTGGCG ATTTTGATGC 
AACAGTTTAT ACTCCAGAAC TGGGTCAAGT AAAACCTGCC ACGAAGGTCA 
TGTATTCTCA GTGAGGTTAG ATTCTTTTTT TATATTGTTA AACACAGCCT 
TACGTATTCA GTGGTGTTAT AAATTATACT CTGTTGTGTA CAACTAGTAG 
TCCAACATCA ATGAGGGGAA AAAACTTCTG GGACCATTGT CTAGCAATTA 
TTGGATGATA TTTATGTGAA AAAAAAAAAA AAAA

Gene models with high sequence identity

  1. AT1G78620.1 [+] show detail - Protein of unknown function DUF92, transmembrane
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther Protein of unknown function DUF92, transmembrane 1.9e-127
HMMPfam Protein of unknown function DUF92, transmembrane 3.9e-64

See the detailed result >

AT1G78620.1

Model type
Protein coding
Short Description
Protein of unknown function DUF92, transmembrane
Computational Description
Protein of unknown function DUF92, transmembrane; LOCATED IN: chloroplast, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF92, transmembrane (InterPro:IPR002794); Has 865 Blast hits to 865 proteins in 301 species: Archae - 133; Bacteria - 238; Metazoa - 78; Fungi - 68; Plants - 85; Viruses - 0; Other Eukaryotes - 263 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-10-J03 introduced

  • F25344 - rosette leaf::desaturated green / rosette leaf::increased size / stem::desaturated green / cauline leaf::desaturated green / cauline leaf::abnormal / whole plant::increased height

Mutant lines with disrupted or induced

7 mutant lines found