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RAFL04-10-O12

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00404)

full reading [+] show sequence

Nucleotide sequence: RAFL04-10-O12 - full reading 
GTTTTAGACT TTTAACAATG GCTTTCTCTT CTCTATCTCC TCTACCTATG 
AAGTCACTTG ACATTTCGAG ATCCTCATCT TCTGTCTCAA GATCTCCTTA 
CCATTTTCAG AGATACCTAT TGAGACGTCT ACAGCTAAGT TCCCGTTCAA 
ACTTAGAAAT CAAAGATTCA TCAAACACTA GGGAAGGTTG TTGTTCCAGC 
GCTGAGTCAA ATAAATGGAA GAGGATTTTG TCTGCAGCAA TGGCGGCGGC 
TGTTATAGCC TCGAGCTCCG GCGTTCCGGC CATGGCAGAG CTTAACAGGT 
TCGAGGCCGA TACACGTGGC GAGTTTGGGA TTGGCTCGGC TGCTCAGTAC 
GGTTCTGCTG ATCTCAGCAA AACAGTTCAC TCCAATGAAA ATTTCAGAAG 
AGCCAACTTT ACTTCTGCCG ACATGAGAGA GTCTGATTTC AGCGGTTCGA 
CCTTCAATGG CGCATATCTT GAGAAAGCAG TTGCATACAA AGCTAACTTC 
TCAGGTGCTG ATTTGAGCGA TACATTGATG GACCGCATGG TGCTAAATGA 
GGCGAATCTG ACAAATGCAG TGCTGGTCCG ATCGGTTCTA ACCAGAAGTG 
ACCTCGGTGG TGCCAAAATC GAAGGTGCTG ATTTTAGTGA CGCTGTGATT 
GATCTTCTTC AGAAACAGGC TCTGTGTAAA TACGCAACCG GGACAAACCC 
ATTGACCGGA GTGGACACGA GGAAGAGTCT TGGCTGTGGA AATAGCCGGA 
GAAACGCATA TGGTTCGCCT TCTTCTCCTC TTCTCAGTGC ACCGCCTCAA 
CGTCTGCTAG GCCGTGATGG ATTCTGCGAT GAAAAGACCG GTCTCTGTGA 
TGTCAAGTAG TTTCAAGATG TTATGTATCA TGTGTGATTA CAATACAGAT 
ATAGAATTTG TATCTTTATA TGTTGTAAAA AAAAAAAAAA AA

Gene models with high sequence identity

  1. AT1G12250.1 [+] show detail - Pentapeptide repeat-containing protein
    E-value: 0; Score: 99.89

 

InterPro Scan Digest

Program Description E-value
HMMPfam Pentapeptide repeat 6.2e-06
HMMPfam Pentapeptide repeat 2.2e-07
HMMPfam Pentapeptide repeat 6.7e-09

See the detailed result >

AT1G12250.1

Model type
Protein coding
Short Description
Pentapeptide repeat-containing protein
Computational Description
Pentapeptide repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentapeptide repeat (InterPro:IPR001646); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G44920.2); Has 7687 Blast hits to 4280 proteins in 513 species: Archae - 134; Bacteria - 5724; Metazoa - 1; Fungi - 0; Plants - 235; Viruses - 4; Other Eukaryotes - 1589 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-10-O12 introduced

  • F06529 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

8 mutant lines found