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RAFL04-10-P04

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00305)

full reading [+] show sequence

Nucleotide sequence: RAFL04-10-P04 - full reading 
GTCTTCTCCG TTCGAAATCG CATCCATCGC CGTCGTCGTC GGTGACGAAA 
ACCACCGCGT AAAACCGTTT CCTAAATCAG ATGTTCAATC TTAGAAGTAT 
CTCTTAGAAG CTCTCTTGTA TGAAAAAATG GGACTGTTAA GCATAATCCG 
GAAGATCAAG AAGAAAGAGA AGGAGATGCG TATTCTTATG GTTGGACTTG 
ATAATTCTGG GAAGACGACG ATTGTTCTGA AAATAAACGG AGAAGACACA 
AGTGTGATTA GTCCAACTCT TGGATTCAAC ATCAAAACCA TTATCTACCA 
AAAGTATACG CTAAATATAT GGGATGTTGG TGGGCAAAAG ACTATAAGAT 
CGTATTGGAG GAATTACTTT GAGCAGACTG ATGGTTTGGT TTGGGTGGTT 
GATAGTTCTG ATCTTAGGAG GTTAGATGAT TGCAAGATGG AACTTGACAA 
TCTCTTGAAA GAAGAGAGGC TAGCTGGTTC ATCTTTGCTG ATACTAGCAA 
ATAAGCAGGA TATTCAAGGT GCACTAACAC CTGATGAAAT TGGCAAGGTG 
CTAAACTTAG AGTCCATGGA TAAAAGCCGG CACTGGAAGA TAGTGGGTTG 
CAGCGCATAC ACGGGTGAAG GTTTGTTGGA AGGATTCGAT TGGTTGGTTC 
AAGACATTGC CTCCAGGATT TACATGCTTG ACTAATCGAC TACTGCATTG 
CACAATCAAT GGCTTGTTAT ACTCAACTAT ATGCAGTGAC TTTGTATTGG 
CTCTAAGTTT TTCCTTCAGT TCTATTGTAA CGATGATTAG ACAAAACATA 
AATATTTCCA AGAAAAAAAA AAAAAAAA

Gene models with high sequence identity

  1. AT2G18390.1 [+] show detail - ADP-ribosylation factor family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMSmart ADP-ribosylation factor 1e-50
HMMSmart Small GTPase SAR1-type 4.2e-22
superfamily P-loop containing nucleoside triphosphate hyd 8.9e-48
HMMPanther ADP-RIBOSYLATION FACTOR-LIKE 2, ARL2 5.7e-115
HMMPanther ARF/SAR superfamily 5.7e-115
FPrintScan ARF/SAR superfamily 2.7e-16
FPrintScan ARF/SAR superfamily 2.7e-16
FPrintScan ARF/SAR superfamily 2.7e-16
FPrintScan ARF/SAR superfamily 2.7e-16
ProfileScan ARF 21.951
HMMPfam ARF/SAR superfamily 1.6e-69
HMMTigr Small GTP-binding protein 2.4e-17
Gene3D no description 2.1e-58

See the detailed result >

AT2G18390.1

Model type
Protein coding
Short Description
ADP-ribosylation factor family protein
Curator Summary
Encodes a member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases. Mutant has abnormal mitosis and cell cycle control during seed development.
Computational Description
TITAN 5 (TTN5); FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: in 6 processes; LOCATED IN: intracellular; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), Small GTP-binding protein (InterPro:IPR005225), Small GTPase SAR1-type (InterPro:IPR006687), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ADP-ribosylation factor A1B (TAIR:AT5G14670.1); Has 10006 Blast hits to 10000 proteins in 420 species: Archae - 13; Bacteria - 39; Metazoa - 4544; Fungi - 1627; Plants - 1505; Viruses - 3; Other Eukaryotes - 2275 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-10-P04 introduced

  • F21738 - seed::increased size

Mutant lines with disrupted or induced

4 mutant lines found