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RAFL04-12-F21

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00450)

full reading [+] show sequence

Nucleotide sequence: RAFL04-12-F21 - full reading 
AACACTGGTC GAAAGAAGAC GAACATAAAC TCGTCTCCGG TAACCAAAAA 
TGGTTTCCAT GACTACTTCA TCTTCTTCGT ACGGAACATT CTCTACAGTC 
GTCAACAGTT CTAGACCTAA TTCCTCAGCA ACCTTTCTCG TCCCTTCCTT 
GAAATTCTCC ACCGGAATAT CGAATTTCGC GAATCTGAGT AATGGGTTTT 
CTCTAAAATC TCCAATTAAT CCTGGGTTTC TCTTCAAGTC TCGTCCTTTC 
ACTGTCCAAG CTAGAGCTGC TGCAGAAAAA ACCGTTCACG ATTTCACCGT 
TAAGGACATT GATGGGAAGG ATGTTGCTTT GAACAAATTC AAGGGGAAAG 
TTATGTTGAT TGTCAATGTT GCTTCAAGAT GTGGTTTGAC ATCATCAAAT 
TACTCAGAGC TTTCACATCT GTACGAGAAA TACAAAACTC AAGGATTTGA 
GATTCTAGCT TTTCCCTGCA ATCAGTTTGG TTTCCAAGAG CCCGGGTCAA 
ACTCCGAGAT CAAACAATTC GCTTGCACCC GGTTTAAAGC AGAGTTCCCT 
ATATTTGATA AGGTTGACGT GAATGGACCA AGCACAGCGC CGATCTACGA 
GTTCTTGAAA TCAAACGCAG GAGGATTCTT GGGTGGTCTC ATTAAATGGA 
ACTTTGAGAA GTTCTTGATT GATAAAAAGG GAAAGGTCGT TGAGAGGTAC 
CCTCCCACCA CATCCCCTTT CCAAATCGAG AAAGACATCC AGAAGTTGCT 
TGCCGCTTAA AAACTTTTGC TCATGAGTGA GCATATAGAG ACTGATGGTT 
AAAGTAACCG TAAATTGTGA CATAAAGTTT CCGGTTATTG CTTGTATACC 
TTCTTACATT CTAAGTTGTA CTAATCGCTT AATAATTTGC GTATAATGGT 
AATGTTATAT ACATTATATT AAAAAAAAAA AAAAAA

Gene models with high sequence identity

  1. AT2G25080.1 [+] show detail - glutathione peroxidase 1
    E-value: 0; Score: 99.89

 

InterPro Scan Digest

Program Description E-value
HMMPanther Glutathione peroxidase 4.7e-96
superfamily Thioredoxin-like fold 2.4e-62
ProfileScan Glutathione peroxidase 73.466
PatternScan Glutathione peroxidase 0
PatternScan Glutathione peroxidase 0
Gene3D Thioredoxin fold 4.2e-66
FPrintScan Glutathione peroxidase 1.9e-21
FPrintScan Glutathione peroxidase 1.9e-21
FPrintScan Glutathione peroxidase 1.9e-21
HMMPfam Glutathione peroxidase 7.2e-45

See the detailed result >

AT2G25080.1

Model type
Protein coding
Short Description
glutathione peroxidase 1
Curator Summary
Encodes glutathione peroxidase.
Computational Description
glutathione peroxidase 1 (GPX1); FUNCTIONS IN: glutathione peroxidase activity; INVOLVED IN: oxidation reduction, response to oxidative stress; LOCATED IN: chloroplast thylakoid membrane, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336), Glutathione peroxidase (InterPro:IPR000889); BEST Arabidopsis thaliana protein match is: glutathione peroxidase 7 (TAIR:AT4G31870.1); Has 7896 Blast hits to 7895 proteins in 1765 species: Archae - 2; Bacteria - 4003; Metazoa - 799; Fungi - 210; Plants - 390; Viruses - 8; Other Eukaryotes - 2484 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-12-F21 introduced

  • F27134 - cauline leaf::decreased size / stem::increased thickness / cauline leaf::dark green / cauline leaf::abnormal / stem::abnormal

Mutant lines with disrupted or induced

1 mutant line founds