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  3. RAFL04-12-K15

RAFL04-12-K15

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00441)

full reading [+] show sequence

Nucleotide sequence: RAFL04-12-K15 - full reading 
ACCACAGAGA AAACTTCGTC TCTCTTCTCT GCTTCGCCCT CTCATTTCCT 
GTGAGATAAA GGCGGAGTCT CTCTCCAGTT ATTTTGCTCA TCCATCGATT 
CTTAGAGTTC AAAATGGTTG ATCAAGTTCA GCACCCCACT ATTGCGCAGA 
AAGCTGCCGG GCAGTTCATG CGTTCAAGTG TTTCCAAGGA CGTTCAAGTG 
GGTTACCAGA GGCCTTCTAT GTATCAAAGA CATGCAACCT ACGGAAACTA 
CTCCAATGCT GCATTTCAAT TTCCTCCGAC ATCCCGGATG TTGGCAACAA 
CTGCTTCTCC CGTGTTTGTC CAAACCCCAG GAGAGAAGGG GTTCACTAAC 
TTTGCCCTTG ACTTTCTGAT GGGTGGTGTT TCTGCTGCCG TCTCCAAGAC 
TGCTGCTGCT CCTATTGAAC GTGTTAAGCT TTTGATCCAG AACCAGGATG 
AGATGATTAA AGCTGGCAGG CTTTCTGAAC CCTACAAGGG TATTGGTGAC 
TGTTTCGGCA GGACGATTAA GGATGAAGGT TTTGGTTCTC TATGGAGAGG 
AAACACTGCC AATGTTATCC GTTATTTCCC CACTCAGGCC TTGAACTTTG 
CCTTCAAAGA TTACTTCAAA AGACTTTTCA ACTTTAAGAA GGACAGAGAT 
GGTTACTGGA AGTGGTTTGC TGGTAACTTG GCATCTGGAG GAGCAGCTGG 
TGCCTCTTCC CTTCTGTTTG TGTACTCCCT TGACTATGCC CGTACCCGTC 
TAGCTAATGA TGCCAAGGCT GCAAAGAAAG GAGGTGGTGG AAGACAGTTT 
GATGGTCTTG TTGATGTCTA CAGAAAGACA CTTAAGACTG ATGGTATTGC 
TGGTCTGTAC CGTGGATTCA ACATCTCATG TGTTGGTATC ATTGTCTACC 
GTGGTCTGTA CTTTGGACTC TATGACTCTG TGAAGCCTGT TCTCCTCACT 
GGTGACTTAC AGGACAGTTT CTTCGCTAGT TTCGCTCTTG GATGGGTTAT 
TACCAATGGT GCGGGTCTTG CATCCTACCC CATTGACACT GTCCGCAGAA 
GAATGATGAT GACGTCTGGT GAAGCTGTCA AGTACAAGAG TTCTTTGGAC 
GCCTTCAAGC AGATCCTCAA GAATGAAGGA GCCAAGTCAC TCTTCAAGGG 
AGCTGGTGCC AACATTCTGC GTGCTGTTGC AGGTGCTGGT GTGCTTTCCG 
GTTACGACAA ATTGCAGCTG ATTGTCTTCG GTAAGAAGTA CGGATCAGGA 
GGTGCCTAAG CATTGCTTCT TCCTCCTTTT TTCGATTTTA ATTGCGGTTT 
TAAGGCCCGC AATAAACTGA GATGTTGATG AAATTTTTTT TGCTTAAGAC 
TTAGGGAGGC ATGTGCCCTA AACCAAATTT TATATCGTTC TGACGCCAAC 
TTTTTTTACT TATGGAATAA TTCATGTTTG AGACAAAAAA AAAAAAAAAA

Gene models with high sequence identity

  1. AT3G08580.2 [+] show detail - ADP/ATP carrier 1
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily Mitochondrial substrate carrier 9e-81
HMMPfam Mitochondrial substrate/solute carrier 5.3e-24
HMMPfam Mitochondrial substrate/solute carrier 4.4e-21
HMMPfam Mitochondrial substrate/solute carrier 1.3e-16
HMMPanther ADP,ATP CARRIER PROTEIN 2.5e-186
HMMPanther Mitochondrial substrate carrier 2.5e-186
FPrintScan Mitochondrial carrier protein 2.9e-68
FPrintScan Mitochondrial carrier protein 2.9e-68
FPrintScan Mitochondrial carrier protein 2.9e-68
FPrintScan Mitochondrial carrier protein 2.9e-68
FPrintScan Mitochondrial carrier protein 2.9e-68
FPrintScan Mitochondrial carrier protein 2.9e-68
FPrintScan Adenine nucleotide translocator 1 2.2e-65
FPrintScan Adenine nucleotide translocator 1 2.2e-65
FPrintScan Adenine nucleotide translocator 1 2.2e-65
FPrintScan Adenine nucleotide translocator 1 2.2e-65
FPrintScan Adenine nucleotide translocator 1 2.2e-65
FPrintScan Adenine nucleotide translocator 1 2.2e-65
FPrintScan Adenine nucleotide translocator 1 2.2e-65
ProfileScan Mitochondrial substrate/solute carrier 25.238
ProfileScan Mitochondrial substrate/solute carrier 21.741
ProfileScan Mitochondrial substrate/solute carrier 18.973

See the detailed result >

AT3G08580.2

Model type
Protein coding
Short Description
ADP/ATP carrier 1
Curator Summary
mitochondrial ADP/ATP carrier
Computational Description
ADP/ATP carrier 1 (AAC1); FUNCTIONS IN: binding, copper ion binding, ATP:ADP antiporter activity; INVOLVED IN: transport, purine nucleotide transport; LOCATED IN: in 10 components; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108), Adenine nucleotide translocator 1 (InterPro:IPR002113); BEST Arabidopsis thaliana protein match is: ADP/ATP carrier 2 (TAIR:AT5G13490.2); Has 19858 Blast hits to 12534 proteins in 484 species: Archae - 0; Bacteria - 0; Metazoa - 8967; Fungi - 5060; Plants - 3882; Viruses - 0; Other Eukaryotes - 1949 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-12-K15 introduced

  • F02023 - Specific phenotypes were NOT observed.
  • F12201 - Specific phenotypes were NOT observed.
  • F19429 - Specific phenotypes were NOT observed.
  • F20242 - rosette leaf::decreased size / rosette leaf::epinastic / rosette leaf::increased width / sporophyte vegetative stage::decreased speed / stem::present in greater numbers in organism / rosette leaf::epinastic
  • F21227 - rosette leaf::desaturated green / rosette leaf::decreased size / rosette leaf::increased width / stem::abnormal / sporophyte vegetative stage::decreased speed
  • F22403 - Specific phenotypes were NOT observed.
  • F27239 - Specific phenotypes were NOT observed.
  • F29034 - rosette leaf::decreased size / rosette leaf::abnormal / rosette leaf::present in fewer numbers in organism / cauline leaf::decreased size / cauline leaf::present in fewer numbers in organism / sporophyte vegetative stage::decreased speed / stem::present in fewer numbers in organism

Mutant lines with disrupted or induced

14 mutant lines found