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RAFL04-12-P17

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00495)

full reading [+] show sequence

Nucleotide sequence: RAFL04-12-P17 - full reading 
ACAAACAAAA CAATCATTGG AAGAAGCAAA AGAAAAAAAA AAAGATTGAA 
ATGGAGAAGA AGCTACCGAG AAGATTGGAA GGCAAAGTCG CGATTGTGAC 
GGCTTCGACG CAAGGGATTG GTTTCGGAAT CACTGAGCGT TTCGGTCTCG 
AAGGCGCTTC CGTCGTCGTC TCTTCCCGCA AACAGGCAAA TGTTGATGAG 
GCAGTAGCAA AACTCAAATC CAAAGGGATT GATGCATATG GAATCGTCTG 
TCATGTTTCC AATGCTCAAC ATCGCCGCAA TCTTGTCGAA AAGACGGTTC 
AGAAATATGG GAAGATAGAT ATCGTTGTCT GTAACGCTGC TGCCAATCCA 
TCTACAGACC CAATCTTGTC TAGCAAAGAA GCTGTTCTTG ACAAGCTTTG 
GGAAATCAAT GTCAAATCCT CTATACTTCT CCTGCAGGAT ATGGCTCCTC 
ACCTTGAGAA GGGTTCTTCT GTTATCTTCA TAACTTCTAT TGCTGGATTT 
TCACCACAAG GAGCTATGGC TATGTATGGT GTCACTAAAA CTGCTCTTCT 
CGGACTAACT AAGGCGCTTG CTGCTGAGAT GGCCCCCGAT ACACGTGTGA 
ACGCAGTTGC ACCCGGTTTT GTGCCCACAC ACTTTGCTTC TTTCATCACC 
GGTAGCTCTG AAGTGAGGGA AGGTATTGAA GAGAAGACTC TGCTTAACAG 
GTTGGGAACA ACGGGAGACA TGGCTGCTGC GGCTGCTTTC TTAGCATCAG 
ATGATTCTTC TTACATCACT GGAGAAACTT TGGTTGTCGC TGGAGGAATG 
CCTTCAAGAC TCTAAACAAT TTCACATCAA TAATAGCGTA AAGAATGCAA 
TCAGGGTATC AAGTAAGTAG AGATGTTTTT TTTAGAGTTT TCAACTAAAC 
AAGACTTTAA GAAACGAAAG ATGTTCCAAT AATATCACGA GGCCATTGGA 
TACTTGTTGG TCTTGTAAAA GATAATTTCT TCATCAGAAA GACTCGTTTG 
GGTTTAATTC AGTGGTAGAA CAATAAAGTT TGGGTTTCGC ATGTATGTGT 
ATATGTAACA ACTAGGGTTC TAAAAAAAAA AAAAAAA

Gene models with high sequence identity

  1. AT4G05530.1 [+] show detail - indole-3-butyric acid response 1
    E-value: 0; Score: 99.91

 

InterPro Scan Digest

Program Description E-value
PatternScan Short-chain dehydrogenase/reductase, conserved site 0
FPrintScan Glucose/ribitol dehydrogenase 3.8e-31
FPrintScan Glucose/ribitol dehydrogenase 3.8e-31
FPrintScan Glucose/ribitol dehydrogenase 3.8e-31
FPrintScan Glucose/ribitol dehydrogenase 3.8e-31
FPrintScan Glucose/ribitol dehydrogenase 3.8e-31
FPrintScan Glucose/ribitol dehydrogenase 3.8e-31
FPrintScan Short-chain dehydrogenase/reductase SDR 0.00009
FPrintScan Short-chain dehydrogenase/reductase SDR 0.00009
superfamily NAD(P)-binding domain 1.7e-70
HMMPfam Short-chain dehydrogenase/reductase SDR 3.8e-24
HMMPanther DEHYDROGENASE, SHORT CHAIN PROTEIN 13-RELATED 7.8e-140
HMMPanther Short-chain dehydrogenase/reductase SDR 7.8e-140
Gene3D NAD(P)-binding domain 3.2e-66

See the detailed result >

AT4G05530.1

Model type
Protein coding
Short Description
indole-3-butyric acid response 1
Curator Summary
Encodes a peroxisomal member of the short-chain dehydrogenase/reductase (SDR) family of enzymes. Loss of IBR1 function causes increased resistance to indole-3-butyric acid without affecting plant responses to IAA, NAA, and 2,4-D. This enzyme may be responsible for catalyzing a dehydrogenation step in the beta-oxidation-like conversion of IBA to IAA.
Computational Description
indole-3-butyric acid response 1 (IBR1); FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: root hair elongation, indolebutyric acid metabolic process, response to indolebutyric acid stimulus; LOCATED IN: peroxisome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT2G29150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-12-P17 introduced

  • F11118 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found