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RAFL04-13-C05

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda16963)

full reading [+] show sequence

Nucleotide sequence: RAFL04-13-C05 - full reading 
GAATCTGCCT TCAATGGCTT CTTCAGCAGC AGCCATCGTC TCCGGTTCTC 
CATTTCGTTC TTCACCATTA ATCCATAACC ATCATGCTTC TCGTTATGCT 
CCTGGATCCA TCTCCGTCGT ATCTCTCCCC CGTCAAGTTT CCCGCCGTGG 
CCTCTCCGTT AAATCGGGGT TGATCGAGCC AGACGGAGGA AAACTCATGA 
ACCTCGTAGT CGAAGAATCA CGGCGGCGCG TGATGAAACA CGAGGCGGAG 
ACGGTTCCGG CAAGGATCAA GCTGAACCGT GTGGATCTAG AGTGGGTACA 
TGTGCTTAGC GAAGGCTGGG CAAGTCCTCT CAAAGGTTTC ATGAGACAGT 
CAGAGTTCCT CCAAACACTT CATTTTAACT CGTTCCGGCT CGAAGACGGC 
TCCGTCGTCA ACATGTCGGT TCCGATCGTC CTCGCTATCG ACGACGATCA 
GAAGTTTCGT ATCGGGGATT CCAACCAAGT CACACTCGTT GACTCGGTTG 
GTAATCCCAT CGCGATTCTC AACGAGATTG AGATTTACAA GCATCCCAAA 
GAAGAACGAA TCGCGAGAAC ATGGGGAACC ACGGCTCGTG GGCTTCCTTA 
TGCGGAAGAA GCAATCACCA AAGCTGGAAA CTGGTTGATT GGAGGTGATT 
TACAAGTTTT GGAGCCGATC AAGTACAATG ATGGTTTAGA CCGGTTTCGT 
TTATCTCCGT CGCAGCTGCG GGAGGAGTTT ATAAGGCGCG GTGCGGACGC 
GGTTTTCGCG TTCCAGCTTA GGAACCCGGT GCATAATGGT CATGCGCTTC 
TTATGACGGA TACTCGTAGA AGACTTCTTG AGATGGGTTA CAAAAACCCT 
GTCTTGTTGT TGAATCCACT TGGTGGGTTT ACTAAGGCTG ATGATGTACC 
TCTCAGCTGG CGTATGAGAC AGCACGAGAA GGTGTTGGAG GATGGTGTAC 
TGGATCCAGA GACCACTGTA GTCTCTATCT TCCCATCTCC GATGCTATAC 
GCTGGCCCAA CTGAGGTTCA ATGGCATGCC AAAGCTAGGA TCAACGCGGG 
AGCTAATTTC TACATTGTTG GTCGCGATCC TGCCGGTATG GGCCATCCGA 
CAGAGAAGAG AGATCTTTAT GATGCCGATC ACGGGAAGAA AGTGCTTAGC 
ATGGCACCAG GACTTGAACG CCTCAACATT CTACCCTTCA AGGTCGCTGC 
ATATGACAAA ACTCAGGGGA AAATGGCCTT CTTTGATCCT TCCAGGTCTC 
AAGACTTCCT CTTCATATCA GGAACCAAGA TGCGTGGGTT GGCGAAGAAG 
AAAGAGAACC CACCAGATGG TTTCATGTGT CCCTCTGGTT GGAAGGTGTT 
GGTTGACTAC TACGACAGTC TCAGTGCAGA GACTGGTAAT GGAAGGGTTT 
CAGAAGCTGT TGCTTCTGCT TGAATGCAAA AGGTTTCCTT GTCCCACAAG 
ATTCACATTT CCTGTTTGTT AGTAACTAAA CTCCGTGACA AAAAGCTTCC 
AATAAAACCA ATGTAACATC TGTGTGTTCT TTGCGTCTCT GTTGTCAAAC 
TTGTCGTCGA GTCGCATCGA TTTGTACCAT ATTTGCTTAT TGTGTTTTAA 
ATGTAACAAC ATTTGTGTAT GAAAAAAAAA A

Gene models with high sequence identity

  1. AT5G43780.1 [+] show detail - Pseudouridine synthase/archaeosine transglycosylase-like family protein
    E-value: 0; Score: 99.94

 

InterPro Scan Digest

Program Description E-value
Gene3D no description 1.4e-50
Gene3D Rossmann-like alpha/beta/alpha sandwich fold 5.1e-67
superfamily Nucleotidylyl transferase 8.7e-75
superfamily Pseudouridine synthase/archaeosine transglycosylase-like 5.2e-46
HMMPanther SULFATE ADENYLYLTRANSFERASE 1.9e-179
HMMPanther ADENYLSULFATE KINASE/SULFATE ADENYLTRANSFERAS 1.9e-179
HMMTigr Sulphate adenylyltransferase 3.5e-198
HMMPfam Sulphate adenylyltransferase 5.9e-85

See the detailed result >

AT5G43780.1

Model type
Protein coding
Short Description
Pseudouridine synthase/archaeosine transglycosylase-like family protein
Curator Summary
sulfate adenylyltransferase, ATP sulfurylase
Computational Description
APS4; FUNCTIONS IN: sulfate adenylyltransferase (ATP) activity; INVOLVED IN: sulfate assimilation; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Pseudouridine synthase/archaeosine transglycosylase-like (InterPro:IPR015947), Sulphate adenylyltransferase (InterPro:IPR002650); BEST Arabidopsis thaliana protein match is: Pseudouridine synthase/archaeosine transglycosylase-like family protein (TAIR:AT4G14680.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-13-C05 introduced

  • F05806 - Specific phenotypes were NOT observed.
  • F12541 - Specific phenotypes were NOT observed.
  • F16933 - rosette leaf::increased size / rosette leaf::abnormal / cauline leaf::increased size / stem::abnormal / cauline leaf::epinastic / whole plant::increased height
  • F18834 - Specific phenotypes were NOT observed.
  • F22636 - Specific phenotypes were NOT observed.
  • F24818 - Specific phenotypes were NOT observed.
  • F27415 - Specific phenotypes were NOT observed.
  • F29335 - rosette leaf::dark green / cauline leaf::decreased size / cauline leaf::present in fewer numbers in organism / stem::decreased thickness / stem::abnormal / stem::abnormal

Mutant lines with disrupted or induced

9 mutant lines found